Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01894 ATGGATATTAGCCTTGATGTTTTCCATAGTAACTCGCTTAGAGATTCATTGCAAAAGTTCTTCCGGCCTGAGGTTTTAGATGGGAACAATAAGTACAAATGTGATAGTTGTAAGAAATTAGTGCCGGCAAAGAAGCAGATGAGTATACTCCAAGCGCCTAATATTCTTGTTATACAGCTCAAGAGATTTGAGGGCATATTGGGGGGCAAGATTGATAAGGCTGTTGCATTTGAAGAGGTTTTGTTACTTTCTAGCTTCATGTGCAAAGCGAGTCAGGATCCACTACCAGAATATAAGCTTTTTGGTACTATTGTGCATTCAGGCTACTCCCCGGAGTCTGGTCACTATTATGCCTACATAAAGGATGCAATGGGTCGATGGTATTGTTGTGATGATTCTTGTGTAACAGTTGCAAGTTTGCAAGAAGTTTTGTCAGAGAAGGTTTATATTCTTTTTTTCTCTCGAACTACTCAAAGGCCAGCGTTAGTTAATGATTCTCTTGTTTCCAACGGCGTAAAGCCTCATCACTCCAATGGGAGTCAGGCATCTGAAAGTGCGAAGGTTGAGGCACCATTGAAAGCAGTGCATTCAAAATCAAATTCTGAGCAATCTACTTGGAAGGATATGCCAAGGGTATCTAAAATTAGTAAAGGGCCTTCTAGCTCAAGAGTGAAGTTTGACATTAATGGAAATTCTGCTTCCAAGAGAAGTCCTGCTCCTGCAACTGTCAATGGGAAAGTGGACATTTCTAAGAATCAGCTTGTGGTAATTAATGGGCATGTGAAGGACACAGTTTCTTTGGAGAATGGTAAGAAAGATCCTCCGTCACTGCCAGCCAGGAATGGCTCTGTGAAAAATAAAGTTGACGTAGGTGATAGATTTAAAAGAAAGGATTCAGCATTAACAAATGGTTCCACTGATATTCATTCAGTTGATATGCATTTTGCCAAATCAGATCCAACGGTAGACAATAATAGAAGCACGGTAACAACAGGTAAGGGGCCAGAAAACTTTAAGCAAGAAAGCAATGGCCACGGTGAACCTAAAATATTGGGGAAGAGGAAAGTACAGGATACTTCAAGCATTTTGCTTGCACATGATGGTCAGTCTCGAACAGAAGTTGAAGAGTTGAAAGACATTCTTGCAAAAGAAGCCAAGTCTGCTTTGAGGTCATGTGGCTGGACAGAAAACGTTTTTAACTTCATGCGATCTAGAAAGAGGTTACGAGCACAAGAAGCTGGTCATATAACAGGTGCAGACGAGATAAGGAGGTCATTAATAAGAGATGCGAAGGGAGCTTTCTTATCTAAGATTCCTGAGTCACTGAGGAAGGATCTGATTGAACGTCTCCGGTCGTTTAGCCAAGATAAATAG 1374 0.4098 MDISLDVFHSNSLRDSLQKFFRPEVLDGNNKYKCDSCKKLVPAKKQMSILQAPNILVIQLKRFEGILGGKIDKAVAFEEVLLLSSFMCKASQDPLPEYKLFGTIVHSGYSPESGHYYAYIKDAMGRWYCCDDSCVTVASLQEVLSEKVYILFFSRTTQRPALVNDSLVSNGVKPHHSNGSQASESAKVEAPLKAVHSKSNSEQSTWKDMPRVSKISKGPSSSRVKFDINGNSASKRSPAPATVNGKVDISKNQLVVINGHVKDTVSLENGKKDPPSLPARNGSVKNKVDVGDRFKRKDSALTNGSTDIHSVDMHFAKSDPTVDNNRSTVTTGKGPENFKQESNGHGEPKILGKRKVQDTSSILLAHDGQSRTEVEELKDILAKEAKSALRSCGWTENVFNFMRSRKRLRAQEAGHITGADEIRRSLIRDAKGAFLSKIPESLRKDLIERLRSFSQDK 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01894 457 MobiDBLite consensus disorder prediction 317 350 - -
Aip08g01894 457 Gene3D Cysteine proteinases 1 158 - -
Aip08g01894 457 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 11 208 - -
Aip08g01894 457 MobiDBLite consensus disorder prediction 320 338 - -
Aip08g01894 457 MobiDBLite consensus disorder prediction 265 285 - -
Aip08g01894 457 Pfam Ubiquitin carboxyl-terminal hydrolase 29 153 IPR001394 GO:0004843|GO:0016579
Aip08g01894 457 SUPERFAMILY Cysteine proteinases 1 161 IPR038765 -
Aip08g01894 457 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 98 116 IPR018200 GO:0004843|GO:0006511
Aip08g01894 457 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1 156 IPR028889 -
Aip08g01894 457 MobiDBLite consensus disorder prediction 169 244 - -
Aip08g01894 457 MobiDBLite consensus disorder prediction 169 185 - -
Aip08g01894 457 MobiDBLite consensus disorder prediction 196 239 - -
Aip08g01894 457 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 17 11 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01894 Aip-Chr8 49542059 49549603 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g01894 1 161 Miscellaneous Gene Families AT2G24640 41.818 5.25e-31 123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g01894 08 49542059 49549603 Aip08g01894 08 49542059 49549603 ECH