Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00223 ATGCAAGACCCAACAATATTTCAACCCATCAAACCCCAATTTCCTGAACAAGAACAACTTAAATGCCCACGTTGCGACTCAACAAACACCAAATTCTGCTACTACAACAACTACAATCTCTCACAGCCACGCCATTTTTGTAAGAATTGCAGAAGGTATTGGACCAAAGGAGGTGCTCTTAGGAACATCCCAGTTGGTGGTGGAAGCAGGAAGAACACAAAAAAATCATCCACCAACAACTCCTCCTCCAAACGCCTTACATCATCATCTGCACCATCATCATCATCAGTATCCCCTTCACCATCCGTTTCCACTCCAGCACAGGCTGCTTCATCCGCTCCTGAATCCGACTCGGCCCAGGCCTACGCCGCCCAGCCTACTGTGGCTGATCAAGGCCCAGGCTTAAGCTTCAGTTCCCTATTGGCAACTAGCCATTTGGGGAGCCTATTGGAGGGTCTGAATTCAAATGGATCAAGTCTTAAAATGGTGCAAATGAATGAATTCGGAGTGAATGTGAATTCGACCGGTTCTGTTGAGCCGCCTGTGAGCTCGAATTCTAGTAGAAATCCAGGGTTGGATGTTCAGAGTAATGGCAATAATGCAGAGAGCTTTCTGAGTATGCATAATGGTGATTCAAGCTGTTGGAATAATGGTAGCAATGGATGGTCTAATCTTGCAATATTTACACCAGGATCAAGCTTTCAGTAG 708 0.4576 MQDPTIFQPIKPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNTKKSSTNNSSSKRLTSSSAPSSSSVSPSPSVSTPAQAASSAPESDSAQAYAAQPTVADQGPGLSFSSLLATSHLGSLLEGLNSNGSSLKMVQMNEFGVNVNSTGSVEPPVSSNSSRNPGLDVQSNGNNAESFLSMHNGDSSCWNNGSNGWSNLAIFTPGSSFQ 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00223 235 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
Aip08g00223 235 PANTHER DOF ZINC FINGER PROTEIN DOF3.1-LIKE 2 235 - -
Aip08g00223 235 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 2 235 IPR045174 GO:0003700|GO:0006355
Aip08g00223 235 MobiDBLite consensus disorder prediction 175 205 - -
Aip08g00223 235 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
Aip08g00223 235 MobiDBLite consensus disorder prediction 69 126 - -
Aip08g00223 235 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
Aip08g00223 235 MobiDBLite consensus disorder prediction 61 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00223 Aip-Chr8 1581117 1581824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00223 11 150 C2C2-Dof Transcription Factor Family AT1G51700 56.338 7.86e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aip08g00223 zf-Dof 2.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00223 - - adu:107458974 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00223 08 1581117 1581824 Aip08g00223 08 1581117 1581824 ECH
Aip08g00223 08 1581117 1581824 Aip09g00595 09 6590403 6592401 PCT