Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g03542 ATGCGCCGTGAACTAAGAAAAAAGTTCCTTCCAGAGCACTACAGGCAAGAAGTTTTCATCAAATTTCACAATTTGAAACAAAAATCATTGACCGTGGAGGAATACACTATGGAGTTTGAAGAGCTTCTTATGAAGTGTGACATTCAAGAGCCTGAAGAACAAACTGTTGCTCGCTACCTCGGAGGGCTTAATGAGGAGATTGCAAACATTGTCCAACTACAACCATTCTGGACGTTGGATGATGTTACAAGACTAGCATTGAAGAAGTGGACTCCTCAACAATCCTCTAAGGTTAGTCCTTTGAAAATTTCACAAGCCAATAAGGAGTGCAACTCTTCTCGCTCTACTGAATCCAATAGAAGGTGTTTCAAGTGCCAAGGATTTGGGCATATTGCTGCTGATTGCCCAAATCGAAGAGTTATCACTCTAATTGAAGAAGACCATGAAGAGCCAAGTGAAGAGTTCAAGAAGGAGGATGATATTGACTATGATGCTGAAGAGGAGGTTCCAGCGGATTGTGGTGAAGCTTTGATGGTTCGCCGCATTTTGAGCACTGCCATGATAACTGAAGATGAAGGATGGCTCCGCCATAACATTTTTCACACACAGTGCACTGCCCAAGGAAAAGTATGCAAGGTCATCATTGACTCCGAAAGTTGTGAGAATGTTGTTGCGGCTTATATAGTGGAGAAGCTGAAGATTCCAACTGAGGAACATCCTCACCCTTATAAGTTGCAGTGGCTGAGAAAAGGGAATGAGGTCAAAGTGACAAGGCGATATTGCGTTCAATTCTCAATTGGGAGTCAATATATAGACGAGGTATGGTGTGATGTCATCCCGATGGACGCATGTCACTTGTTGCTAGGACGTCCGTGGCAATATGATCGTTGTGCTGTCCACGACGGATTCAAAAATACGTATTCCTTCTTCAAGGATGGAGTGAAGATTGTGTTGACTCCACTAAGACCTGATGAGTACGAGAAGCAAGTTGAGCCATCCTTAATCACAAGGTCAGACCTTAACAAAACTCATCGAAAGTTCAACTTCATGTGTTTTCTACTGATTTGTGAGGAGAACAATGAGACCTTGTCCGAGCATGAGGATGTCAAGCCTTTAATTGAAgaattttctgatgtgTGGGATCTTGTTTTGCCACAAGCCGAGTTCTCCTACAACAATTCCATTAGTCAAACAACAGGGAAGTGTCCATTCGAGGTGGTATATGGCAAGCGACCCCTGAGTCCTTTAGACCTTTCGCCACTACCAACTCCTCGAGAATATAGTGCAAATGCCGATGAACGTGCTGAACAAATCAAAAAGCTCCACGAGGAGGTACGACAGAAGATATTGCGTCAGACTGCTCAATATGAGGCCCAAGCCAACAAACATAGGAGACCAAATATTTTCAATGTCGAAATTTTgGTTTTAAGGGGGTTAGAAAATCATAGTCCCTTAGCATCCCCCTCCATGGCTCCCTACCATCTCCAAGACGCTCTATACTGCTCAGAGGAAGAGGATGAATTAGAACAAGATGAGGGTTCCGGGAAGAGAGTAGAAGGGGATATGTTTTGGGATGATGAGGAGCTTGCGTGGATGCTGGCCAGGGAAGAACAACACACACACACCCCTCTCTGCTTCCAATTGGACTCTGCTCGCAGAGACGCGGTCGAGTGGATACTCAAAGTCAGCTCACATTACTCCTTCTCTCCTCTCACTTCTCTTCTTGCCGCCAACTACCTTCACAGGTTCCTCTTCACTTTCTCCTCCATTAACAATCTCAATAAGCCATGGATCACTCAGCTGGCTGCCGTCGCTTCTCTCTCACTCGCTGCCAAGCTTGAAGAGACTCATCTTCCCCACTTACTAGACCTCCAAGTGGAGGATTGCAGATACGTGTTCGAAGCCAAAACCATCAAGAGGATGGAGATTTTGGTGCTTTCAACTCTCCGATGGAAAATGAATCCCGTCACTCCTCTCTCTTTTCTCGACTATATCACGCGAAGACTTGGATTATTCAACTTGAACGACTTCCTCACCAGATCCCAATCCCTTCTTCTATCTACCCTTCCAGATAGCAGGTTCATGAGTTACCTTCCTTCTGTGGTGGCAACTGCCACAATGATGCACGTGTTGAATAGCGTGGAGCAGCGAAACCAGGTGGTACGCATTCTTGGAACGAACAAAGAGAAGGTGGATGAATGCTTGAAGCTGATATGGGAACAGGGGAAGAAGAAACGCAAGTTTGGATGGGTTCCAGATAGTCCAAACGGCGTCATGGATGTGTCGTTTAACTCTGCCTCTGATGATAGCTCCAATGATTCATGGCCTCTACTACTTGCTAATAATAATAACAACAATGTTTCTTCACCGGAACCTAAGAAGAATAGGACTCTACTAAACCCTCCCAACTCATCCCATTTCATTTAG 2427 0.4462 MRRELRKKFLPEHYRQEVFIKFHNLKQKSLTVEEYTMEFEELLMKCDIQEPEEQTVARYLGGLNEEIANIVQLQPFWTLDDVTRLALKKWTPQQSSKVSPLKISQANKECNSSRSTESNRRCFKCQGFGHIAADCPNRRVITLIEEDHEEPSEEFKKEDDIDYDAEEEVPADCGEALMVRRILSTAMITEDEGWLRHNIFHTQCTAQGKVCKVIIDSESCENVVAAYIVEKLKIPTEEHPHPYKLQWLRKGNEVKVTRRYCVQFSIGSQYIDEVWCDVIPMDACHLLLGRPWQYDRCAVHDGFKNTYSFFKDGVKIVLTPLRPDEYEKQVEPSLITRSDLNKTHRKFNFMCFLLICEENNETLSEHEDVKPLIEEFSDVWDLVLPQAEFSYNNSISQTTGKCPFEVVYGKRPLSPLDLSPLPTPREYSANADERAEQIKKLHEEVRQKILRQTAQYEAQANKHRRPNIFNVEILVLRGLENHSPLASPSMAPYHLQDALYCSEEEDELEQDEGSGKRVEGDMFWDDEELAWMLAREEQHTHTPLCFQLDSARRDAVEWILKVSSHYSFSPLTSLLAANYLHRFLFTFSSINNLNKPWITQLAAVASLSLAAKLEETHLPHLLDLQVEDCRYVFEAKTIKRMEILVLSTLRWKMNPVTPLSFLDYITRRLGLFNLNDFLTRSQSLLLSTLPDSRFMSYLPSVVATATMMHVLNSVEQRNQVVRILGTNKEKVDECLKLIWEQGKKKRKFGWVPDSPNGVMDVSFNSASDDSSNDSWPLLLANNNNNNVSSPEPKKNRTLLNPPNSSHFI 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g03542 808 SMART Cyclin_C_2 656 772 IPR004367 -
Aip07g03542 808 SMART cyclin_7 557 647 IPR013763 -
Aip07g03542 808 SMART cyclin_7 660 740 IPR013763 -
Aip07g03542 808 Pfam Cyclin, C-terminal domain 656 742 IPR004367 -
Aip07g03542 808 Pfam Zinc knuckle 121 137 IPR001878 GO:0003676|GO:0008270
Aip07g03542 808 Gene3D - 355 455 IPR036397 GO:0003676
Aip07g03542 808 CDD retropepsin_like 202 292 - -
Aip07g03542 808 SUPERFAMILY Retrovirus zinc finger-like domains 113 138 IPR036875 GO:0003676|GO:0008270
Aip07g03542 808 SUPERFAMILY Cyclin-like 523 654 IPR036915 -
Aip07g03542 808 Gene3D - 542 654 - -
Aip07g03542 808 Gene3D - 112 140 - -
Aip07g03542 808 ProSiteProfiles Zinc finger CCHC-type profile. 120 137 IPR001878 GO:0003676|GO:0008270
Aip07g03542 808 SMART c2hcfinal6 121 137 IPR001878 GO:0003676|GO:0008270
Aip07g03542 808 Coils Coil 428 448 - -
Aip07g03542 808 MobiDBLite consensus disorder prediction 774 808 - -
Aip07g03542 808 Gene3D Acid Proteases 178 317 IPR021109 -
Aip07g03542 808 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 1 296 - -
Aip07g03542 808 Pfam Retrotransposon gag protein 2 65 IPR005162 -
Aip07g03542 808 Gene3D - 532 736 - -
Aip07g03542 808 CDD CYCLIN 552 646 IPR013763 -
Aip07g03542 808 SUPERFAMILY Cyclin-like 639 747 IPR036915 -
Aip07g03542 808 Pfam Cyclin, N-terminal domain 537 654 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g03542 Aip-Chr7 125459191 125469325 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g03542 491 796 Core Cell Cycle Gene Families AT5G67260 43.860 9.45e-72 239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g03542 07 125459191 125469325 Aip05g00605 05 7432013 7437504 ECH
Aip07g03542 07 125459191 125469325 Aip01g01008 01 20627570 20629074 ECH
Aip07g03542 07 125459191 125469325 Aip09g03744 09 144269401 144271394 ECH
Aip07g03542 07 125459191 125469325 Aip07g03542 07 125459191 125469325 ECH
Aip06g03745 06 135099957 135103313 Aip07g03542 07 125459191 125469325 PCT