Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g02709 ATGGCTCTTCTGCTAGACAACTGCGAGAGCATTCTACTGTCGCTAGAGTCAAACAAGTCGGTGCCGGCGCCGTTTCTGACAAAGACGTACCAGCTGGTGGACGATCCAGCCACCGATCACATAGTGTCATGGGGAGAAGACCAAAGCACCTTCGTCGTTTGGCGTCCTCCTGAGTTCGCTAGAGATCTTCTTCCTAATTACTTCAAACACAATAACTTCTCAAGTTTCGTTCGCCAGCTCAATACTTATGGTTTCAGAAAGATTGTTCCGGATAGGTGGGAGTTTGCTAATGAATTCTTCAAGAAGGGAGAGAAGCACTTGCTGTGTGAGATCCATAGAAGAAAAACCGCACACCACCCTCAACAGATAACCGCCATCAACCACCACCACTCTCCGATTCCTTCTTTCTTTCCATTCTCAAGCAGGCTCAGCATCTCGCCGCCAAACGACTCCGATGACCAAGCCAATTGGTGTGACTCTCCGCCGCCCACCGCCACACCCTGCTACAACACCTCATCCGTCACGGCGCTGTCGGAGGACAATGAGAGGCTGAGGCGGAGCAACACCATGCTCATGTCGGAGCTTGCACACATGAAGAAGCTCTACAATGACATAATCTACTTCGTTCAGAACCATGTGAAGCCAGTTCCTCCAAGCAACACTTGTTCTTCTTCTTTGCTTCTTTGCAGTAACACGCCATCATCACATTCATATGCTTCTTCCGGTGCCGCTAATGGTAACGTTTCAATGCTGCAAAGGCCGATGAACAATCTTCTCGGGTATTATTCTCAAACTCAAAACTGTCCAAGCAACACGGCAAGGAGCTCCGTCACGATTGTGGAAGCGCCACCACCCTGTAAGACCAAGCTTTTTGGAGTGCCGCTTCAGTCCAAGAAAAGGGTGCACCCTGAGTATGGGTCTAACAACCTCGCTAATTCAGAGACTAACAAGGCGCGTTTGATTTTGGAGAAGGATGACCTTGGCTTGAATCTCATGCCTCCTTCTACTACTTGTTAA 1017 0.4916 MALLLDNCESILLSLESNKSVPAPFLTKTYQLVDDPATDHIVSWGEDQSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAHHPQQITAINHHHSPIPSFFPFSSRLSISPPNDSDDQANWCDSPPPTATPCYNTSSVTALSEDNERLRRSNTMLMSELAHMKKLYNDIIYFVQNHVKPVPPSNTCSSSLLLCSNTPSSHSYASSGAANGNVSMLQRPMNNLLGYYSQTQNCPSNTARSSVTIVEAPPPCKTKLFGVPLQSKKRVHPEYGSNNLANSETNKARLILEKDDLGLNLMPPSTTC 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g02709 338 Gene3D - 17 116 IPR036388 -
Aip07g02709 338 PANTHER BNAC06G00310D PROTEIN 12 336 - -
Aip07g02709 338 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip07g02709 338 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip07g02709 338 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Aip07g02709 338 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 336 IPR027725 -
Aip07g02709 338 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip07g02709 338 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip07g02709 338 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip07g02709 338 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g02709 Aip-Chr7 111430792 111432643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g02709 1 336 HSF AT1G46264 54.960 6.08e-117 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Aip07g02709 HSF_DNA-bind 2.5e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g02709 07 111430792 111432643 Aip07g02709 07 111430792 111432643 ECH
Aip06g03781 06 135568632 135570010 Aip07g02709 07 111430792 111432643 PCT