Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g02672 ATGCAATCCAACGGCTCTGATTCGCAGCAACAGCAACCAACGGACCAGAATCAACGCCAACAGCAGACGCCACCGCACCCGCAGCCACTGCCACTCCCACAGCAGTGGGTGCCGATGCAGTATCCCGCCACCGCCATGGTAATGCAGCACCCCATGCTGCCGCCTCAACATTACGCGCCGCCGCCACCCCAGCCCTACATGCCCTACCACCAGTACCAGCAGCAGGTGCCGCACGTTACCCCCCACCACGCACATCAGCACCAGCCTCAGGGATCCACCGCCGAGAACAAGACGATCTGGGTCGGAGATTTGCATCATTGGATGGACGAGAATTATCTCCACCGCTGCTTCGCTTCCACCGGCGAGATTTCCTCCATCAAGGTTATTCGCAATAAGCAGACTGGTCTATCAGAGGGTTATGGATTTGTGGAATTCTATTCACACGGCACAGCTGAAAAAGTTTTACAGAACTATGCTGGAATTTTGATGCCAAACACAGAGCAACCTTTCCGGCTGAACTGGGCAACATTTAGCACAGGAGACAAGCGTTCAGACAATGTTCCAGACCTTTCAATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGCCTCTTGCATGAGACTTTCTCCAGTAGATACCCTTCTGTTAAGGCTGCAAAAGTTGTTTTTGATGCCAACACTGGCCGCTCCAAGGGATATGGTTTTGTCAGGTTTGGTGATGATAATGAGAGGTCTCAAGCTATGACTGAAATGAATGGTGTCTACTGTTCTAGCAGGCGTATGCGTATTGGAGCTGCAACTCCTAGGAAATCATCTGCTTATCAACAAGGAGGTCAATCAAATGGCACATCCAGCCAATCTGAAGCTGATTCTAATAACACAACTGTAAGTTTTTCAGCTTCTTGTTAG 912 0.5 MQSNGSDSQQQQPTDQNQRQQQTPPHPQPLPLPQQWVPMQYPATAMVMQHPMLPPQHYAPPPPQPYMPYHQYQQQVPHVTPHHAHQHQPQGSTAENKTIWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHGTAEKVLQNYAGILMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAADVTDSLLHETFSSRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRRMRIGAATPRKSSAYQQGGQSNGTSSQSEADSNNTTVSFSASC 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g02672 303 MobiDBLite consensus disorder prediction 1 35 - -
Aip07g02672 303 Gene3D - 178 297 IPR012677 -
Aip07g02672 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 269 IPR000504 GO:0003723
Aip07g02672 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 166 IPR000504 GO:0003723
Aip07g02672 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 262 IPR000504 GO:0003723
Aip07g02672 303 SUPERFAMILY RNA-binding domain, RBD 173 286 IPR035979 GO:0003676
Aip07g02672 303 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 29 297 - -
Aip07g02672 303 MobiDBLite consensus disorder prediction 267 303 - -
Aip07g02672 303 MobiDBLite consensus disorder prediction 270 303 - -
Aip07g02672 303 MobiDBLite consensus disorder prediction 1 23 - -
Aip07g02672 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 177 IPR000504 GO:0003723
Aip07g02672 303 Gene3D - 96 176 IPR012677 -
Aip07g02672 303 CDD RRM2_SECp43_like 189 268 - -
Aip07g02672 303 CDD RRM1_SECp43_like 98 178 - -
Aip07g02672 303 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 29 297 - -
Aip07g02672 303 SMART rrm1_1 191 265 IPR000504 GO:0003723
Aip07g02672 303 SMART rrm1_1 98 173 IPR000504 GO:0003723
Aip07g02672 303 SUPERFAMILY RNA-binding domain, RBD 58 178 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g02672 Aip-Chr7 110603109 110607614 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g02672 99 267 Eukaryotic Initiation Factors Gene Family AT4G34110 29.586 5.63e-17 79.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g02672 07 110603109 110607614 Aip07g02672 07 110603109 110607614 ECH
Aip06g03827 06 135975301 135979624 Aip07g02672 07 110603109 110607614 PCT