LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip07g02653	ATGACGACGACGACGACGACGACTTCAGAAACCACAACCACAGCCACCGCCACCGCCACCGTCCTACTCCCTTCTTCTTCTTCTTCTTCTTCTTCTCCGTCTCAGATGGATTCTTCTAACTATAACAAGCCTTCTTCTTCTTCTACTTTTTATTTTTCTTGTTCAACTGTCTCTTCAGCTGCCGCTGACAGCAAGGGGCAGTCGATTCAGCAGCGGAGGCTTACGAGGCAGAGGAGACTCCGCGACCATGACGCTGCCACCGACACCTATTCCTTGCCGGCTTCTCCTCTCCCTTCTTTCAAGTCCTTCGACTCGCCTCCCGTGCCTCTCCCCCTGCCACGTCCTGACTCCCCGTTGACCCGCCGTCCCGAGTCAACTAGTCCCAATTCCGGTCATCCTTTCTTTGCCACTCCGCGTACCAGAAAGAGTGCGGATCATGATGCAGCTAAAAATGTGAGATCTCCAAGCAATTTGCGCAGAGCATCTTTTGATCCGACGATCCAGAGTGCAAGATATTTAAGGGTCAATATACCATCTACAACGGTGCTATCTGGCAATATTGCATACAAAGATCCCCAAGAACACTCTCATGAGAGTTACTCTGAGACTATTTCTGAGTTGAAACTGCATTATGCTGCCAAGAGTGCCCCAACAAGCGTACTATCCAGTCCTGTTACAAGTCCGCGTAGATCCAGCAACTTAGATTTCTATGATCCTTCCATACATTTTATTCAAGATTTCAATGAAACTTTCAAAGTGTCACCGGCGAAAACACTTCACAGTCCAGACCTTTCTTCCCTTCGCGGCCGCAGTCCCTTCCACACTCCTAATAACATTCGAGAGGGATCTCAGCCTTATAATCTTTGCTCCAAAGAGCGGCCTGAAAACAATGCACATCCATTACCCCTTCCGCCTAAATCTCCATCTCCATCTCCATCACCGGCTCAATCAACTATCATGCATCAAACTTCTGAAATTTCACCCTCCATGAAGAAGGGTCAATGGCAGAAAGGGAAACTCATTGGCCGTGGATCATTTGGAAGTGTTTATCATGCTACCAACCTAGAAACGGGAGCATCGTGTGCAATGAAAGAGGTGGATCTGATTCATGATGATCCTAAGTCTGCTGATTCCTTAAAGCAACTAGAGCAGGAAATCCGAATTCTCCGTCAGCTACACCACCCTAACATTGTGCAGTATTATGGCAGTGAAATAGTTGGTGATCACTTGTACATATATATGGAGTATGTTCATCCTGGATCAATTCATAAATTTATACATGAAAATTGTGGAGCTATGACTGAGTCTGTTGTTCGCAATTTCACTCGGCATATTCTCTCTGGATTGGCATACTTACATAATACAAAGACTATCCACAGGGATATCAAAGGTGCAAACTTGCTGGTTGATGCCTCTGGCATTGTCAAGCTTGCAGATTTTGGGGTGTCAAAGATTCTGACAGAGAAATCATATGAACTTTCATTGAAGGGAAGTCCCTACTGGATGGCTCCAGAGCTTATGATGGCTGCCATAAAGAAAGAATCAAATCCTGACATTGCCATGGCCATCGACATATGGAGCTTAGGGTGCACCATCATTGAAATGCTGACTGGCAGACCTCCTTGGAGCGAGTTTGAAGGGCCTCAAGCAATGTTCAAGGTACTACACAGATCCCCACCTATACCAGAAACTCTATCTTCAGAGGGACAGGATTTCCTTAAGCAGTGTTTCAGAAGGAACCCTGCGGATCGACCAACAGCAGCAACCCTCCTTACACACGCCTTTGTACAAAATTTGCATGATCAAGATGTCCTAATTCATCCACAACAACTCTATCATCCTAAAGGAGACCCGGGACCAAAAGAGAATACACGCAAACGCAATAGCCCAAAACACAATTCAAAATCCAGTCCCAGACACTCCATTGGCTCCAGGATTATTAACAAGATTCATAATATAATCGGAAGTTAA	1971	0.4581	MTTTTTTTSETTTTATATATVLLPSSSSSSSSPSQMDSSNYNKPSSSSTFYFSCSTVSSAAADSKGQSIQQRRLTRQRRLRDHDAATDTYSLPASPLPSFKSFDSPPVPLPLPRPDSPLTRRPESTSPNSGHPFFATPRTRKSADHDAAKNVRSPSNLRRASFDPTIQSARYLRVNIPSTTVLSGNIAYKDPQEHSHESYSETISELKLHYAAKSAPTSVLSSPVTSPRRSSNLDFYDPSIHFIQDFNETFKVSPAKTLHSPDLSSLRGRSPFHTPNNIREGSQPYNLCSKERPENNAHPLPLPPKSPSPSPSPAQSTIMHQTSEISPSMKKGQWQKGKLIGRGSFGSVYHATNLETGASCAMKEVDLIHDDPKSADSLKQLEQEIRILRQLHHPNIVQYYGSEIVGDHLYIYMEYVHPGSIHKFIHENCGAMTESVVRNFTRHILSGLAYLHNTKTIHRDIKGANLLVDASGIVKLADFGVSKILTEKSYELSLKGSPYWMAPELMMAAIKKESNPDIAMAIDIWSLGCTIIEMLTGRPPWSEFEGPQAMFKVLHRSPPIPETLSSEGQDFLKQCFRRNPADRPTAATLLTHAFVQNLHDQDVLIHPQQLYHPKGDPGPKENTRKRNSPKHNSKSSPRHSIGSRIINKIHNIIGS	656

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip07g02653	656	MobiDBLite	consensus disorder prediction	298	312	-	-
	Aip07g02653	656	MobiDBLite	consensus disorder prediction	1	47	-	-
	Aip07g02653	656	MobiDBLite	consensus disorder prediction	258	291	-	-
	Aip07g02653	656	MobiDBLite	consensus disorder prediction	120	136	-	-
	Aip07g02653	656	MobiDBLite	consensus disorder prediction	313	331	-	-
	Aip07g02653	656	MobiDBLite	consensus disorder prediction	139	153	-	-
	Aip07g02653	656	MobiDBLite	consensus disorder prediction	59	73	-	-
	Aip07g02653	656	MobiDBLite	consensus disorder prediction	258	334	-	-
	Aip07g02653	656	PANTHER	MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA	37	638	-	-
	Aip07g02653	656	MobiDBLite	consensus disorder prediction	610	647	-	-
	Aip07g02653	656	MobiDBLite	consensus disorder prediction	59	156	-	-
	Aip07g02653	656	SUPERFAMILY	Protein kinase-like (PK-like)	307	641	IPR011009	-
	Aip07g02653	656	SMART	serkin_6	335	596	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aip07g02653	656	ProSiteProfiles	Protein kinase domain profile.	335	596	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aip07g02653	656	Pfam	Protein kinase domain	336	595	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aip07g02653	656	Gene3D	Transferase(Phosphotransferase) domain 1	331	635	-	-
	Aip07g02653	656	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	37	638	-	-
	Aip07g02653	656	ProSitePatterns	Protein kinases ATP-binding region signature.	341	364	IPR017441	GO:0005524
	Aip07g02653	656	MobiDBLite	consensus disorder prediction	100	118	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip07g02653	Aip-Chr7	110002012	110006609	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip07g02653	178	598	MAP Kinase Kinase Kinase	AT5G66850	51.702	9.06e-148	442

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Aip07g02653		Pkinase	9e-68	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip07g02653	07	110002012	110006609	Aip07g02653	07	110002012	110006609	ECH
	Aip06g03833	06	136039006	136045112	Aip07g02653	07	110002012	110006609	PCT