Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g02487 ATGGCTGGGTTCTTCTCTCTAGGTGGAAGGGGAGCTGGCCCACACAGCAACAAGGAAGAAGAAGGAGAAAGAGTAGCAGAAAAACATCATCAAGACCATCACAACAGCAATAGCCTATTCTTGTTCAGGAACAACGAGGAGGTGTACAACAAAGGAGGATTCGAGATATGGCCGCAGCCCTACCACCAAAACCAAGGTTTCAGCAACTACTACTCGTTTGGGGTGGGTCCTAGTACTCATCAACATAGAAGGAACAACAACAACAACGACAACTCCAACAACAACTCCAACGACGAAGGCGTCTCCTTCTGTGTCTCGGATGAGTCGACGAGATTTGGACTGACGATGATGAGGTCCTCCGGTGGTGGTGGAGGCACGGGGAGCGGCGGCGGTGGCGGTGGCGTAAACTGCCAGGACTGCGGGAACCAAGCAAAGAAAGACTGTGCTCACCTGAGATGCAGGACTTGTTGTAAGAGCCGAGGGTTTCAGTGCCAAACCCACGTGAAGAGCACTTGGGTTCCCGCCGCAAAACGCCGTGAACGACAGCAACAACTCGCTGCCTTGCAGCAACAGCAATTGCACAGTGCAGACACTTCTTCTAAACGACACAGAGACACTCATCCAGCTCTTGACACTCTTCCTTGCGCTCCTCCTGTTCCCACCATCACCACCACAGGGTTGGAACTGGGTCAATTCCCTTCAGAAGTAAGCTCATCAGCGGTGTTTAGGTGTGTGAAAGTTAGCGCAATAGACAGTGTAGATGAACAGTATGCATATCAAACCGCTGTCAACATCGGAGGCCATGTTTTCAAGGGAATTCTCTACGATCAAGGTCCCCAAGGACTTTACACTACTGCCATTGTTGCCGAGGGTTCTTCCGCTGGAGGAGGAGGAGGAGGAGGAGCTGAACCTCAACAACAACTCAGCCTCATAACAGCTGCAACCACCACCGCTGGGAACCCCTTTGACCCTTCTTCGCTTTACCCGGCTCCACTCAACGCTTTCATGGCTGGTACGCAATTCTTCCCACCACCAAAGTCCTAA 1044 0.5192 MAGFFSLGGRGAGPHSNKEEEGERVAEKHHQDHHNSNSLFLFRNNEEVYNKGGFEIWPQPYHQNQGFSNYYSFGVGPSTHQHRRNNNNNDNSNNNSNDEGVSFCVSDESTRFGLTMMRSSGGGGGTGSGGGGGGVNCQDCGNQAKKDCAHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQQQLHSADTSSKRHRDTHPALDTLPCAPPVPTITTTGLELGQFPSEVSSSAVFRCVKVSAIDSVDEQYAYQTAVNIGGHVFKGILYDQGPQGLYTTAIVAEGSSAGGGGGGGAEPQQQLSLITAATTTAGNPFDPSSLYPAPLNAFMAGTQFFPPPKS 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g02487 347 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 231 279 IPR006511 -
Aip07g02487 347 MobiDBLite consensus disorder prediction 188 217 - -
Aip07g02487 347 Pfam Domain of unknown function (DUF702) 134 280 - -
Aip07g02487 347 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 345 IPR007818 GO:0003700|GO:0006355
Aip07g02487 347 MobiDBLite consensus disorder prediction 72 101 - -
Aip07g02487 347 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 136 178 IPR006510 -
Aip07g02487 347 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 345 - -
Aip07g02487 347 MobiDBLite consensus disorder prediction 1 34 - -
Aip07g02487 347 MobiDBLite consensus disorder prediction 14 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g02487 Aip-Chr7 104200694 104203217 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Aip07g02487 DUF702 1.7e-64 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g02487 07 104200694 104203217 Aip07g02487 07 104200694 104203217 ECH
Aip06g00089 06 845534 846720 Aip07g02487 07 104200694 104203217 ECH
Aip07g02487 07 104200694 104203217 Aip03g00785 03 7606763 7608014 ECH
Aip03g00785 03 7606763 7608014 Aip07g02487 07 104200694 104203217 ECH
Aip06g00089 06 845534 846720 Aip07g02487 07 104200694 104203217 PCT