Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03896 atGCTGAAAGCCTCCTCCCTCAACGTTACACTAACCTATGATCTCCCTCCTCCTCTCAGAGTCATCAATGAGAAGGTCGTCGGCATCGATTTGGGAACCACCAACTCCGCCGTGGCTGCCATGGAAGGAGGCAAGTCCACCATCATCACTAACGCCGAGGGTCAGAGGACTACCCCTTCCGTCGTTGCCTACACCAAGTCCGGTGACAGGCTGGTTGGCCAGATTGCGAAGCGGCAGGCGGTGGTAAACCCGGAGAACACCTTCTTCTCCGTTAAGAGGTTTATCGGAAGGAAGATGTCGGAGGTAGACGAAGAGTCCAAGCAGTTCTCCTGCAAAGTCATTAGGGATGAGAACGGCAATGTCAAACTTGACTGCCCCGTCATCGGCAAGCAGTTCGCCACCGAAGAGATTTCCTCTCAGGTTTTGAGGAAGCTTGTGGATGATGCTTCAAAGTTTTTGAATGACAAAGTAACAAAGGTTGTGGTCACTGTGCCTGCTTACTTCAACTATTCTCAAAGGACTGCTACAAAGGATGCTGGTCGGATTGCTGGTTTGGAAGTTCTTTGTAGCATAAATGAACCAACTGCTGCCTCCCTTACCTATGGATTTGAAAAGAAGAATAATGAAACAATCCTTGTGTTTGACCTTGGCGGTGGTACTTTTGATGTCTCGGTGCTTGAGGTTAGTGATGGAGTGTTTGAAGTGTTGTCTACTTCTGGAGATACACACCTGGGTGGTGATGACTTTGATAAGAGAATTGTCGATTGGCTGACTGGAAACTTCAAGAGGGATGAAGGTATTGATCTTTTGAAAAATAAACAGGCTCTTCAGCACCTTACCGAGACAGCTGAAAAGGTAAAAATGGAGCTCTCGTCATTGACCCAAACAAACATTAGTTTGTCGTTCATAACCGCGACAGCAGATGGCCCCAAGCATATTGAGACAACCCTTACAAGGGCTAAATTTGAAGAATTATGTTTAGATCTTCTTGATAGAAAGTTGTGTCCGAATGTGGAGAATGCTAAAGGATTGGCGACGGTATTGGAGGTTCCAATACCGGAAAAAATGTGGACTAAAATAGGTCGAAATTCGTCGAGCCGATGGAAAAACCTAAGAGCATTGATGAAGGCTCAACTTTCAAATGATAAGTCCTCACATTTCAAAACACATTCAAAACATGAATTCATTGCTTTGATCAAGTTGGTTGGTTCTCCACTCATCCCTCAACAAGTTCAATCCGATCACACATTTGTTACATCCCTGAAAATTTCTCCCAAAGAAGCTTGTAGTGCAAAGTACATAGTGCAACAATACATAGCAGCAATGGGAGGAGTAGATGCATTGGATTCAATGGAAAGTATGTATGTAGTGGGACAAGTGAGGATGATTGGTTCTGAGATGCGCAAAGAAGATTCTAAACTTAAACCAATTGGAAAAACTGAAGTTGGAGGCTTTGTTCTTTGGCAAAAAAACCCTAATTTATGGCACTTTGAATTGGTTGTTTCTGGCTACAAAGTTAGTGCAGGTTCTGATGGCAATATAACATGGAATCAATCTTCTTCTCAACCTTCTCATGCAAATAAAGGTCCCCCTCGACCACTTCGTCGCTTCTTTCAGGGATTAGATCCAAGGTGTACAACAAACTTGTTTGTAGAAGCAAAATGTGTAGGAGAGAAAAGAATGAACAATGAAGAATGCTTCCTACTAAAGTTAGAAGCAGCACAAGACATTCTTGAATCACAAAACACAGAGCAGACAGAAATCATAAGGCACACAATGTGGGGTTATTTCAGTCAAAGGACAGGGCTATTGATCAAATTTGAGGACAACAAATTGATGAGAATGAAATCCCATATGAAAGATGATCATGATTTTGTGTTTTGGGAAACAAGCATTGAGTCTTTGATTGAGGATTATAGGTATGTTAATGGGATCAACATAGCACATGGTGGAAAATCAGTGGTTATGTTATGTAGGTATGGCATGGAAATTAATCACAAGAGGAAGATTGAGGAAACATGGAAAATTGAAGAAGTTGGTTTTAATGTTTGTGGTTTGTCCATGGATTGTTTCTTACCTCCTTCTGATATCTACAAGGGACATGATCCCATGGAACAAATAGATTAG 2127 0.4227 MLKASSLNVTLTYDLPPPLRVINEKVVGIDLGTTNSAVAAMEGGKSTIITNAEGQRTTPSVVAYTKSGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDEESKQFSCKVIRDENGNVKLDCPVIGKQFATEEISSQVLRKLVDDASKFLNDKVTKVVVTVPAYFNYSQRTATKDAGRIAGLEVLCSINEPTAASLTYGFEKKNNETILVFDLGGGTFDVSVLEVSDGVFEVLSTSGDTHLGGDDFDKRIVDWLTGNFKRDEGIDLLKNKQALQHLTETAEKVKMELSSLTQTNISLSFITATADGPKHIETTLTRAKFEELCLDLLDRKLCPNVENAKGLATVLEVPIPEKMWTKIGRNSSSRWKNLRALMKAQLSNDKSSHFKTHSKHEFIALIKLVGSPLIPQQVQSDHTFVTSLKISPKEACSAKYIVQQYIAAMGGVDALDSMESMYVVGQVRMIGSEMRKEDSKLKPIGKTEVGGFVLWQKNPNLWHFELVVSGYKVSAGSDGNITWNQSSSQPSHANKGPPRPLRRFFQGLDPRCTTNLFVEAKCVGEKRMNNEECFLLKLEAAQDILESQNTEQTEIIRHTMWGYFSQRTGLLIKFEDNKLMRMKSHMKDDHDFVFWETSIESLIEDYRYVNGINIAHGGKSVVMLCRYGMEINHKRKIEETWKIEEVGFNVCGLSMDCFLPPSDIYKGHDPMEQID 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03896 708 SUPERFAMILY Actin-like ATPase domain 208 335 IPR043129 -
Aip06g03896 708 ProSitePatterns Heat shock hsp70 proteins family signature 1. 29 36 IPR018181 -
Aip06g03896 708 ProSitePatterns Heat shock hsp70 proteins family signature 2. 213 226 IPR018181 -
Aip06g03896 708 Pfam Hsp70 protein 26 336 IPR013126 GO:0005524|GO:0140662
Aip06g03896 708 PANTHER HEAT SHOCK PROTEIN 70KDA 12 341 IPR013126 GO:0005524|GO:0140662
Aip06g03896 708 PRINTS 70kDa heat shock protein signature 25 38 - -
Aip06g03896 708 PRINTS 70kDa heat shock protein signature 76 84 - -
Aip06g03896 708 PRINTS 70kDa heat shock protein signature 219 229 - -
Aip06g03896 708 PRINTS 70kDa heat shock protein signature 160 180 - -
Aip06g03896 708 PRINTS 70kDa heat shock protein signature 53 65 - -
Aip06g03896 708 Gene3D - 202 334 - -
Aip06g03896 708 Coils Coil 276 296 - -
Aip06g03896 708 SUPERFAMILY Actin-like ATPase domain 25 205 IPR043129 -
Aip06g03896 708 Gene3D - 27 201 - -
Aip06g03896 708 PANTHER STROMAL 70 KDA HEAT SHOCK-RELATED PROTEIN, CHLOROPLASTIC-LIKE 12 341 - -
Aip06g03896 708 Pfam Protein of unknown function (DUF620) 454 694 IPR006873 -
Aip06g03896 708 Gene3D Actin; Chain A, domain 4 246 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03896 Aip-Chr6 136685389 136691458 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03896 06 136685389 136691458 Aip06g03896 06 136685389 136691458 ECH
Aip06g03896 06 136685389 136691458 Aip07g02574 07 106954203 106956304 PCT