Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03880 ATGGCATTCTTAATCTTCAAATCTCAACCTCCTTACAACACCATCACCACAATCTCCAACCTCACTTCTTCAAACCCAATAGACCTTGCAAGAATCAATGATGTCACTACTTCACACACAATGTTCCAAATTGGTAAAGAGGTTATTGTCCCTTTGAAATGCTCTTGTTCTTCAATGAAGGACACCAAGTATTACTATTACCAATCCAAAACCAAACATGTCTTGGGTGCAATTTTGCCACAAACAACATATTTCAATGTTGCAAATGAAACTTTCCAAGGCTTAACCACTTGTGATTCCCTAAAGAGGTTCAATCCTTATCCGGAGCTCGATTTGCGCGCCGGCATGGAGTTGAATGTTCCATTAAGGTGTGCTTGTCCAACATGGAATCAAGAAAGAAATGGCACCAAGTATTTGATGACTTATTCTGTGAATTGGGGTGACACCATTTCTAGCATTGCATCAAGATTCAATGCAACAATACAGAATATTCTTGAAGCCAATGGTATTTCCATGGAAACTACAATTTTTCCATTCACAACTCTTCTGATTCCTTTGCCAAGTGAACCACTGAGTTCATCAACAATCATAGTTGCCAATGTTCCACCATATGATTCTACTTCACCACATGCCAAAACCGGTTCCAAAGGGATCGAGTTAAAGATACTAGTAATATTCAATATAGTTCTTGCTGCTATATTGATTCTGAGCATCATGTTATCTCTAGTGTCTTTGATGGGAAAGATATCAGAAAGATTCATCAAGGCAGGCAAAATCCATAAGAGAAATAGTGCAATTTCAGAAGATATCCGCGTCGAAATAGTGAGCATTGATGTGAACTATTCCAAATTGTACAAGTTTGAGGAAATCAAGGATGCTACCGAAAATTTCAGTTCAAGGAACAGAATCAAAGGTTCTGTATTTCACGGCGAATTCGGTAACAAAAGGGAAGGTTTTGCTGTCAAAAGAAGAATAAATAAAGGGTATGCTTCAAAGGAAATAAATTTGCTTAGAAGAATCAATCATTTCAACTTAATCAAGCTTCAAGGGTATTGTGAAAATGAAGATTTGTTCTATCTTGTGTTTGAATTCATGGAAAATGGTTCCTTAAGAGAATGGCTTAGTAGTGAAGAAAACTCATTTTTGCATAAAAGTTGGTCAAACAGGATTCAAATTGCTTTGGATATTGCAAATGGACTTCAATATCTTCACAACTTCACATATCCTTGTTATGTTCACAATGGTATTAACAGTGGAAACATTCTTCTAAACAAAGATCTAAGGGCAAAGATAGCAAATTTTTCTCTAGCAGAAGAATTATTAGAAAGGAGAATGATAATAAGTTCAAGTTCTTCTCACACTTCAGATGATGTTTATGCCTTTGGAGTGGTACTTTTGGAATTGATCACTGGCAAAGAATGTGTTACACTGCATGGTTTATCAAGAGAAGGAATAATAATGGTTTCTAGGATCATGATGAATAATCTCATTGGCAAGGAGCATGAAGAAGAGAAGTTGAGTTTTTTCTTTGATCCAAGGCTCATTGGAAACATTGAGAGAAAAAGTGCTTTGATGCTAGTTAAGCTAAGTTTAGCTTGCTTGAATCAAGAATCAGAAAGTAGACCAAACATGTCAGAGGTGGTCTCTACCTTGTGGAAAACACTTTCTGAGTCCCATAATAATTGTTGGAGTGAGAAAATTGTCATGTTGAAATGTTAA 1719 0.3624 MAFLIFKSQPPYNTITTISNLTSSNPIDLARINDVTTSHTMFQIGKEVIVPLKCSCSSMKDTKYYYYQSKTKHVLGAILPQTTYFNVANETFQGLTTCDSLKRFNPYPELDLRAGMELNVPLRCACPTWNQERNGTKYLMTYSVNWGDTISSIASRFNATIQNILEANGISMETTIFPFTTLLIPLPSEPLSSSTIIVANVPPYDSTSPHAKTGSKGIELKILVIFNIVLAAILILSIMLSLVSLMGKISERFIKAGKIHKRNSAISEDIRVEIVSIDVNYSKLYKFEEIKDATENFSSRNRIKGSVFHGEFGNKREGFAVKRRINKGYASKEINLLRRINHFNLIKLQGYCENEDLFYLVFEFMENGSLREWLSSEENSFLHKSWSNRIQIALDIANGLQYLHNFTYPCYVHNGINSGNILLNKDLRAKIANFSLAEELLERRMIISSSSSHTSDDVYAFGVVLLELITGKECVTLHGLSREGIIMVSRIMMNNLIGKEHEEEKLSFFFDPRLIGNIERKSALMLVKLSLACLNQESESRPNMSEVVSTLWKTLSESHNNCWSEKIVMLKC 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03880 572 SUPERFAMILY Protein kinase-like (PK-like) 287 561 IPR011009 -
Aip06g03880 572 Pfam LysM domain 142 185 IPR018392 -
Aip06g03880 572 Gene3D LysM domain 139 197 IPR036779 -
Aip06g03880 572 SUPERFAMILY LysM domain 140 186 IPR036779 -
Aip06g03880 572 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE 1 557 - -
Aip06g03880 572 Gene3D Phosphorylase Kinase; domain 1 269 364 - -
Aip06g03880 572 CDD LysM 141 184 IPR018392 -
Aip06g03880 572 Pfam Protein tyrosine and serine/threonine kinase 330 551 IPR001245 GO:0004672|GO:0006468
Aip06g03880 572 Gene3D Transferase(Phosphotransferase) domain 1 365 568 - -
Aip06g03880 572 SMART LysM_2 141 185 IPR018392 -
Aip06g03880 572 ProSiteProfiles Protein kinase domain profile. 240 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip06g03880 572 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 1 557 - -
Aip06g03880 572 ProSiteProfiles LysM domain profile. 140 184 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03880 Aip-Chr6 136491078 136493048 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Aip06g03880 PK_Tyr_Ser-Thr 1e-23 CL0016