Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03871 ATGGCCAAACCGAGTGCCGACGATGGCGAGCTCCGGCGGGCATGCACGACGGCGATTGAGGATCCTCACCAGAAGATCGTGATGGCGATCAGAGTAGCAAAATCCCACGGGATCTTGGGAAAATCTTCCAAGCTTGGCCGTCAGATGGCGAAGCCAAGGGTTCTTGCTCTCTCCATGCAATCAAAAGGTCAGAGGACAACAGCATTTCTTCATGTTTTGAAGTATTCTACGGGAGGAGTTCTTGAGCCTGCAAAACTATACAAGCTGAAGTACCTCTCAAAAGTGGAAGTTTTGACAAATGACCCCAGTGGATGTACATTTACGCTGGGATTTGATAACCTCAGAAGCCAGAGCGTGGCTCCTCCTCAGTGGACAATGCGCAATATTGATGACAGGAATCGCCTCCTCCTTCGCATCTTGAACACATGCAAAGATGTTTTGGGTCGCCTCCCTAAGGTTGTTGGTATAGATGTTGTTGAGATGGCTCTTTGGGCTAAGGAAAATACACCCACGGCTCCTGCTCAGGGTAAAGTTCGAGATGGTGTTCCTGTTGCTTCTGCTGTTTCCGAGACGGAATTGAAAGTCAATGTCGAAAAGGAACTTGTCTCCCAGGCAGAGGAAGAGGACATGGAGGCTCTTTTGGGAACTTATGTCATAGGTGTTGGTGAAGCTGAGGCATTTTCTGAAAGGTTGAAGAGAGAGCTTCAAGCTCTAGAAGCAGCAAACGTGCATGCCATTTTAGAAAGTGAACCTTTGATGGATGGGGTGATGCAAGGACTTGAGTCAGCAACAAATTGTGTGGATGACATGGATGAATGGTTAAACATATTTAACGTGAAACTCCGGCACATGAGAGAAGACATTGAATCAATAGAATCCCGCAATAACAAATTGGTAATGCAATCGGTAAACAACAAGTCTCTCATTGAGGAGCTCGATAAGCTTCTTGAAGGATTGAATGTCCCTCCAGAGTATGCATCAAGTTTGACAGGAGGTTCATTTGATGAAGCTAGAATGCTTCAGAATGTAGAAGCATGTGAATGGTTGACTGGTGCCTTGCGTGGTCTTGAAGCGCCTAATCTAGACCCTGCATATGCAAATATGAGAGCTGTTAAAGAGAAGCGTGCAGAACTTGAAAAATTAAAAACTACTTTTGTTAGGAGAGCATCAGAATTCTTGAGGAATTACTTTGCTAGTTTGGTGGATTTCATGATAAGTGATAAAAGCTACTTCTCTCAGCGAGGACAGTTGAAGAGGCCTGATCATGCGGATTTGCGGTACAAATGCAGGACATATGCACGTCTCTTGCAACACTTAAAGAGTCTTGACAAGAATTGCTTGGGTCCATTGAGAAAAGCTTATTGCAGTTCTCTAAACTTGCTACTTCGCCGAGAGGCTCGTGAATTTGCAAATGAACTTCGTGCTAGTACTAAAGCATCTAGGAACCCCACGGTTTGGCTTGAAGGTTCTACAGGTTCTGGTCAGAATGTCAACGCCACTGACACTTCAACAGTCTCTGATGCTTACGCAAAGATGCTAACAATTTTTATCCCACTTCTGGTGGATGAGAGTTCATTTTTTGCACACTTCATGTGCTTTGAAGTTCCTACGCTTGTTCCTCCAGGAGGTGTTGTTAATGGTAATAAACCTGAATATGATGACGATGATGATTTGGGAATTATGGACATTGATGACAATGATAGTAAATCTGGTAAAAATTCTGCCGAGCTTGCAGCTTTAAACGAATCACTTCAGGATTTGCTTGATGGAATTCAAGAAGACTTCTACGCGGTTGTAGATTGGGCATACAAGATTGATCCCTTGCGCTGCATATCAATGCATGGAATAACGGAACGATATCTTTCCAGTCAGAAAGCCGATGCAGCAGGATTTGTACGCCTTTTGCTTGGTGACCTAGAGGCTCGTATATCTATGCAGTTTGGCCGTTTTGTTGATGAAGCTTGCCATCAAATTGAAAGGAATGAACGCAATGTTCGCCAAGTTGGTGTCCTATCCTACATTCCCAGATTTGCAACCCTGGCAACTCGGATGGAGCAGTATATTCAGGGGCAGTCTAGGGATTTGGTAGACCAGGCATACACAAAATTTGTTAGCATAATGTTTGCGACTTTGGAAAAAATAGCACAAACAGATCCAAAGTATGCTGATATTTTTCTCTTAGAGAACTATGCCGCCTTTCAAAATAGTTTGTATGACCTTGCCAACATTGTGCCTACTTTGGCCAAGTTTTATCACCAGGCTAGTGAAGCCTATGAACAAGCTTGTACGCGCCATATTAGCATGATAATCTATTATCAATTCGAGCGACTTTTTCAATTTCATCGGAGGATTGAGGACTTGATGTTCACAGTTGCACCTGAGGAGATTCCTTTCCAACTCGGGCTATCAAAGATGGATCTTCGAAAGATGTTAAAATCCAGTTTATCGGGGGTTGACAAGTCCATTGCTGCAATGTACAAGAAATTGCAGAAGAACTTGACTTCAGAAGAACTATTACCCTCCTTATGGGATAAATGCAAGAAGGAATTTGTTGACAAGTACGAAAGTTTTGCACAACTTGTGGCTAAGATTTACCCTAATGAGAATATCCCTTCGGTAACAGAGATGAGAGAACTTTTAGCCTCCATGTAA 2652 0.4336 MAKPSADDGELRRACTTAIEDPHQKIVMAIRVAKSHGILGKSSKLGRQMAKPRVLALSMQSKGQRTTAFLHVLKYSTGGVLEPAKLYKLKYLSKVEVLTNDPSGCTFTLGFDNLRSQSVAPPQWTMRNIDDRNRLLLRILNTCKDVLGRLPKVVGIDVVEMALWAKENTPTAPAQGKVRDGVPVASAVSETELKVNVEKELVSQAEEEDMEALLGTYVIGVGEAEAFSERLKRELQALEAANVHAILESEPLMDGVMQGLESATNCVDDMDEWLNIFNVKLRHMREDIESIESRNNKLVMQSVNNKSLIEELDKLLEGLNVPPEYASSLTGGSFDEARMLQNVEACEWLTGALRGLEAPNLDPAYANMRAVKEKRAELEKLKTTFVRRASEFLRNYFASLVDFMISDKSYFSQRGQLKRPDHADLRYKCRTYARLLQHLKSLDKNCLGPLRKAYCSSLNLLLRREAREFANELRASTKASRNPTVWLEGSTGSGQNVNATDTSTVSDAYAKMLTIFIPLLVDESSFFAHFMCFEVPTLVPPGGVVNGNKPEYDDDDDLGIMDIDDNDSKSGKNSAELAALNESLQDLLDGIQEDFYAVVDWAYKIDPLRCISMHGITERYLSSQKADAAGFVRLLLGDLEARISMQFGRFVDEACHQIERNERNVRQVGVLSYIPRFATLATRMEQYIQGQSRDLVDQAYTKFVSIMFATLEKIAQTDPKYADIFLLENYAAFQNSLYDLANIVPTLAKFYHQASEAYEQACTRHISMIIYYQFERLFQFHRRIEDLMFTVAPEEIPFQLGLSKMDLRKMLKSSLSGVDKSIAAMYKKLQKNLTSEELLPSLWDKCKKEFVDKYESFAQLVAKIYPNENIPSVTEMRELLASM 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03871 883 SMART Sec3_PIP2_bind_2 48 146 IPR028258 -
Aip06g03871 883 Coils Coil 188 208 - -
Aip06g03871 883 Coils Coil 221 248 - -
Aip06g03871 883 Coils Coil 281 301 - -
Aip06g03871 883 PANTHER EXOCYST COMPLEX COMPONENT SEC3B 1 883 - -
Aip06g03871 883 Pfam Exocyst complex component SEC3 N-terminal PIP2 binding PH 49 144 IPR028258 -
Aip06g03871 883 PANTHER SEC3/SYNTAXIN-RELATED 1 883 - -
Aip06g03871 883 Pfam Exocyst complex component Sec3 564 867 IPR019160 GO:0000145|GO:0006887
Aip06g03871 883 Pfam Exocyst complex component Sec3 224 485 IPR019160 GO:0000145|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03871 Aip-Chr6 136344853 136354951 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03871 06 136344853 136354951 Aip06g03871 06 136344853 136354951 ECH
Aip06g03871 06 136344853 136354951 Aip07g02606 07 108065041 108076301 PCT