Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03858 ATGCTTGTGACTGATGGTGGCATTGGTAGAGCTGTGGATAACTATAGCACCGGGATAGTGATTATTGGGTTTCTCAATTTCGCTTTGGAACCTAAGGTGCTGTGTGTGGTTATTGATGTTGAGAAAGATCAACATTGTAGCTTGAATTTTAACAAGAAGGGAGAGAAAGAAGAGGAAGAAGAGGAAGAAGAAGAAGAAGAAAGAGTTAGGGATTGTGAATTGAATGGTAGGGCTGATGGCTTAGTTTCAGTAACAGGCCCTAGTGGAAAATCTTGGCCAGTTCAATTAATTAAGATGGAAAATGATATGTTCTTCCATCAGGGATGGCCATCGTTTGTGGGAGATCATCGTCTGGAATGCGGTGATCTGTTGGTTTTCAGATATGAAGGCAACTTTGATAATATAAGAGGTCACAAAAGAGATAGGAATGAGAAATCCTCTCTGGATGTCATTGTTGAAGGGGCTACAAAGAAAATGAGAGGCAACAATGCCGACAACCAGGAACTTAAGCTGAGTATAGTTGGGAAAGACATATTGCAATATGAGTTAGTAAAACCTATTAGTATGTTCAAAGAAAAAGAAGAAACTTCCAGAGCATGTTCAACTAATGACATCCCGTTGCCTTTTCATGTGGGAAATAGCAATGAAGATGAAGATGCTGATCAATATATTCTGAATGGTATTTCACTATCAAACTTAGCAGCACATGATGAGAAAAAAGTAGCTCGATCATTTACTTCATCTTTTCCATATTTTGTAAGGATCATGAAGAGCTTCAACGTTAGCGGTTCATATACTCTGAATATCCCGTATCAATTTTCAATGGCACATCTCCCAAACTGCAAGATAAAGATTATCCTCCATAATTTGAAAGGAGAACATTGGACTGTTAATTCTGTGCCATCAACAAGAGTGCATACAAGTCACACTCTCTGTGGAGGATGGATGGCCTTTGTGCGTGGCAATAACATAAAGGTTGGAGATGTCTGCATTTTTGAACTCGTGCATGAGTGTGAATTACTTGTTCGTATTGCTGGAGGTGGAAAAGATCTACAAGACCCGGTTGCGAAACCAGATTTAAGTAACCCTAGTGCAGGACATGCTATCACTTGCCATAAGGCTTCAAGATATATGTCAGTGAATCCTAAAGACAACCCAAAAAGCATAATAAATGTTGATCAATCAGTTAAAAAGCGGTCAAAGGTTGGTCAAGAAGCTGCTTTTTCCATTGAATTAAGGAAATCTGGTAAAAGATCAAATTCTTCTAAGAAAACGGGGCTTGGCAATCGGACGAAAGCTGCCAATAAAAAGTTGGCTGCTCAGAAGAGGCATCGTGTTGAAGATGAATTAAGCTCACAAGCTAATGCTGGTTTGAGAATGTTGTTTGCACTCGATGAACAAAGAGTGGCTCAAGCCTTTACTTCCCCTTTTCCTAATTTTGTGAAAATCATGAAAAAGTTCAATGTCAGTGGATCATACACTTTGAAAATCCCATACCAGTTCTCCGCTGCACATCTCCCAGCCTACAAAACAGAAATTATTCTTCGAAATTTAAGAGGTGAAAGTTGGACTGTGAACTCTGTACCAGACGCAAAAGGCAGAACGGTGCATACCTTTTGTGGTGGATGGATGGCCTTTGTTCGCGATAATGACATCAATTTTGGGGACACATGCATATTCGAACTCGTTGCTCAGGATAAGTTGATCTTTAAATGGAGATGTTCTTATGTTTTCCATCTTGTGATAATTGGTGCCACTAGATTCCATTTTCTCAAAAGTGGTAATCAAACTTGTGTTGGAGAATCATGA 1809 0.3941 MLVTDGGIGRAVDNYSTGIVIIGFLNFALEPKVLCVVIDVEKDQHCSLNFNKKGEKEEEEEEEEEEERVRDCELNGRADGLVSVTGPSGKSWPVQLIKMENDMFFHQGWPSFVGDHRLECGDLLVFRYEGNFDNIRGHKRDRNEKSSLDVIVEGATKKMRGNNADNQELKLSIVGKDILQYELVKPISMFKEKEETSRACSTNDIPLPFHVGNSNEDEDADQYILNGISLSNLAAHDEKKVARSFTSSFPYFVRIMKSFNVSGSYTLNIPYQFSMAHLPNCKIKIILHNLKGEHWTVNSVPSTRVHTSHTLCGGWMAFVRGNNIKVGDVCIFELVHECELLVRIAGGGKDLQDPVAKPDLSNPSAGHAITCHKASRYMSVNPKDNPKSIINVDQSVKKRSKVGQEAAFSIELRKSGKRSNSSKKTGLGNRTKAANKKLAAQKRHRVEDELSSQANAGLRMLFALDEQRVAQAFTSPFPNFVKIMKKFNVSGSYTLKIPYQFSAAHLPAYKTEIILRNLRGESWTVNSVPDAKGRTVHTFCGGWMAFVRDNDINFGDTCIFELVAQDKLIFKWRCSYVFHLVIIGATRFHFLKSGNQTCVGES 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03858 602 CDD B3_DNA 250 344 IPR003340 GO:0003677
Aip06g03858 602 SUPERFAMILY DNA-binding pseudobarrel domain 475 574 IPR015300 -
Aip06g03858 602 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 456 564 - -
Aip06g03858 602 ProSiteProfiles B3 DNA-binding domain profile. 480 586 IPR003340 GO:0003677
Aip06g03858 602 SUPERFAMILY DNA-binding pseudobarrel domain 79 132 IPR015300 -
Aip06g03858 602 CDD B3_DNA 82 130 IPR003340 GO:0003677
Aip06g03858 602 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 72 454 - -
Aip06g03858 602 Coils Coil 55 75 - -
Aip06g03858 602 SMART B3_2 252 348 IPR003340 GO:0003677
Aip06g03858 602 SMART B3_2 35 141 IPR003340 GO:0003677
Aip06g03858 602 SMART B3_2 480 576 IPR003340 GO:0003677
Aip06g03858 602 PANTHER B3 DOMAIN-CONTAINING 72 454 - -
Aip06g03858 602 MobiDBLite consensus disorder prediction 413 450 - -
Aip06g03858 602 Gene3D - 234 346 IPR015300 -
Aip06g03858 602 Gene3D - 465 576 IPR015300 -
Aip06g03858 602 Pfam B3 DNA binding domain 252 343 IPR003340 GO:0003677
Aip06g03858 602 Pfam B3 DNA binding domain 75 131 IPR003340 GO:0003677
Aip06g03858 602 Pfam B3 DNA binding domain 480 573 IPR003340 GO:0003677
Aip06g03858 602 Gene3D - 68 136 IPR015300 -
Aip06g03858 602 SUPERFAMILY DNA-binding pseudobarrel domain 245 345 IPR015300 -
Aip06g03858 602 CDD B3_DNA 478 563 IPR003340 GO:0003677
Aip06g03858 602 ProSiteProfiles B3 DNA-binding domain profile. 82 156 IPR003340 GO:0003677
Aip06g03858 602 ProSiteProfiles B3 DNA-binding domain profile. 252 348 IPR003340 GO:0003677
Aip06g03858 602 PANTHER B3 DOMAIN-CONTAINING 456 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03858 Aip-Chr6 136233659 136239763 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip06g03858 B3 1.8e-14 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03858 06 136233659 136239763 Aip06g03858 06 136233659 136239763 ECH