Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03827 ATGGAACAATCCAACGGTTCTGATTCGCCGCAGCAAAACCAACACAAACAACAGCAACCGTCGTCAGACAACCATCAACCGCAACAACCGAAGCAGCAACAACGGCAACATCCACCGGCCGTTGCGGTGCCGACGCAGCAGTGGATGCCGTATCCTGCGGCGGCCATGGTAATGCAGCACCACATGTTGCCGCCGCAGCACTACGCGCCGCCTCACTACGTGCCTTATCACCATCCCTACCACGCGCCGGCTCCACCTCCTCCGCCTCACGTGGCTCACCACAACCACCAGCAGCACCAGCATGGATCCGGCGGCGGTGAGAACAAGACGGTTTGGGTTGGAGATTTGCATCACTGGATGGATGAGAACTATCTCCATCGATGCTTCGCTTCCGCCGGAGAGATTTCATCCATCAAGGTTATTCGCAATAAGCAGACTGGTCTATCAGAGGGTTATGGATTTGTTGAATTTCATTCACATGCCACGGCTGAGAAGATTTTACAGAGTTATGCTGGAATTTTGATGCCGAACACAGAGCAACCTTTCCGCCTGAACTGGGCGACATTTAGTACAGGAGAGAAGTCCTCAGACAATGTTCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGTTTGTTGCATGAAACGTTTGCTAGTGTGTTTCCTTCTGTTAAAGCTGCAAAAGTTGTCTTTGATGCCAATACTGGCCGTTCAAAGGGCTACGGTTTCGTTAGGTTTGGAGATGATAGCGAGAGGACGAAAGCTATGACTCAAATGAATGGCGTTTACTGTTCTAGCAGGCCTATGCGTATTGGCGCTGCAACTCCAAGGAAATCATCTGGCCATCAAGGAGGCCAGGCAAATGGCGCATCCAGCCAATCTGAAGCAGATTCTACAAACACAACTATATTTGTTGGAGGACTCGACCCTAATGTTACAGATGAAGATCTTAGGCAGCAATTCTCTCAGTATGGTGAGATAGTATCTGTTAAGATACCTGTTGGAAAGGGGTGTGGTTTTGTCCAATTTGCAATCAGAAATAATGCTGAAGAGGCATTGCAGAAGCTAAATGGGACAGTGATTGGCAAGCAAACAGTTCGTCTTTCTTGGGGCCGTAATCCAGCAAATAAGCAGTTTAGAATGGACTTTGGTGGCAACCACTGGAGTGGCACCTATTACGGAGCCCCTGTTTATGATGGTTATGGATATGCATTGCCTCCTCCTCATGATCCAAGCATATATGCTGCTGCCTACGCTGCTTACCCTATCTATGGAGGCCACCAACAACAAGTAAACTGA 1314 0.4855 MEQSNGSDSPQQNQHKQQQPSSDNHQPQQPKQQQRQHPPAVAVPTQQWMPYPAAAMVMQHHMLPPQHYAPPHYVPYHHPYHAPAPPPPPHVAHHNHQQHQHGSGGGENKTVWVGDLHHWMDENYLHRCFASAGEISSIKVIRNKQTGLSEGYGFVEFHSHATAEKILQSYAGILMPNTEQPFRLNWATFSTGEKSSDNVPDLSIFVGDLAADVTDSLLHETFASVFPSVKAAKVVFDANTGRSKGYGFVRFGDDSERTKAMTQMNGVYCSSRPMRIGAATPRKSSGHQGGQANGASSQSEADSTNTTIFVGGLDPNVTDEDLRQQFSQYGEIVSVKIPVGKGCGFVQFAIRNNAEEALQKLNGTVIGKQTVRLSWGRNPANKQFRMDFGGNHWSGTYYGAPVYDGYGYALPPPHDPSIYAAAYAAYPIYGGHQQQVN 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03827 437 Gene3D - 108 188 IPR012677 -
Aip06g03827 437 SMART rrm1_1 307 374 IPR000504 GO:0003723
Aip06g03827 437 SMART rrm1_1 110 185 IPR000504 GO:0003723
Aip06g03827 437 SMART rrm1_1 203 277 IPR000504 GO:0003723
Aip06g03827 437 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 41 436 - -
Aip06g03827 437 CDD RRM3_NGR1_NAM8_like 305 376 - -
Aip06g03827 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 202 281 IPR000504 GO:0003723
Aip06g03827 437 MobiDBLite consensus disorder prediction 284 302 - -
Aip06g03827 437 Gene3D - 295 408 IPR012677 -
Aip06g03827 437 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 41 436 - -
Aip06g03827 437 MobiDBLite consensus disorder prediction 1 42 - -
Aip06g03827 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 378 IPR000504 GO:0003723
Aip06g03827 437 SUPERFAMILY RNA-binding domain, RBD 81 189 IPR035979 GO:0003676
Aip06g03827 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 189 IPR000504 GO:0003723
Aip06g03827 437 MobiDBLite consensus disorder prediction 277 302 - -
Aip06g03827 437 MobiDBLite consensus disorder prediction 79 107 - -
Aip06g03827 437 SUPERFAMILY RNA-binding domain, RBD 294 407 IPR035979 GO:0003676
Aip06g03827 437 MobiDBLite consensus disorder prediction 1 41 - -
Aip06g03827 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 371 IPR000504 GO:0003723
Aip06g03827 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 273 IPR000504 GO:0003723
Aip06g03827 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 178 IPR000504 GO:0003723
Aip06g03827 437 SUPERFAMILY RNA-binding domain, RBD 186 294 IPR035979 GO:0003676
Aip06g03827 437 CDD RRM2_SECp43_like 201 280 - -
Aip06g03827 437 CDD RRM1_SECp43_like 110 190 - -
Aip06g03827 437 Gene3D - 189 294 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03827 Aip-Chr6 135975301 135979624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03827 88 386 Eukaryotic Initiation Factors Gene Family AT4G34110 28.617 3.50e-29 118
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03827 06 135975301 135979624 Aip06g03827 06 135975301 135979624 ECH
Aip06g03827 06 135975301 135979624 Aip07g02672 07 110603109 110607614 PCT