Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03788 ATGTCTCGTTGGTTATCAATGTTGTCTTTGGCACTACTGTTGCCTCTGATTGTGTGGTCCAAAGCTAATGATAGTAAAGATCATGAAAGAGAAGGAAGAAGAAGCTGCATAGACTACAAGATTTTGAACATTGGAGCAATCATAGACTTCCATTCACTAATTGGAATGGAGCAGAAGATAGCTATGGAAGTTGCTATCAAAGATGTTAATAGCATATTGAGTTGTTACAAGCTTGTTTTGAACTTCAATGATTCTCATCGGAATCCATCTAGTATGGTGGCAGCTGATCTTGCAAACAGCAAAAAGGTGCAAGCTATCATAGGAACAAAACTTGATGGAGCAACATTGGTCAATGAGATTCCTCAAAGCTCAAAGGAAATTCCCATCATATCCCTAACATCAAGTTCAGAAATAAGACAAATTCCATTGCCAAACTTCATACAAATAGGTAATGACATTACCTTAAACTTACAGTGCATTGCAGCCATCATATGTGAATTCAATTGGAGAAAAGTGACAGCAATTTATGAACATGACAATGGATTCACCTCTTATGATTCAGATATATTAACAAAACTCTCATATTCTCTTAGCCATGTTAATTCTGAGGTTGAAAACTATGTAGCTTTTCCTTCAATGGACACCCTTTTAGACCCCAAAACAGCTATAGAACATGAACTTAAGAAGCTAAAGAACAAGAGCTATAACAGGGTTTTCTTGATTCTACAATCATCATTAGAGTTTGCAACTATTCTATTCGAGAAAGCGAATCAGATGGGGTTGATGGAAAAAGGGTCAGTGTGGATCATCACAGATGACATAGCTAGCCATCTTGATTCAATGGATTATTCATCTGTTACCTTCAATATGCAAGGTGTTATTGGGTGCAAAACAAGCTTCGTCGAGTTGAGCCAGACATTCAAACGGTTCAATTTCGCATTCCGGCGTGAATTTGGGTTAGAATATCCTGAAGAAGAAATAGAAAACCCCTATCCAAGTCTCTCTGCTCTTAGAGCTTATGATGCCATTTGGATCATTGCACATGCTCTAAGAAAATCACAATCACAAGGAAACTTTTCCATGGAAGAGTTATCAAAGAATATTGTAGCTACAAATCATGAGGGTCTAAGTGGTAAAATAAGCTTCAAAGATGGAAAATTGTTGGAACCAGCAACATTTAAGATTGTCAATGTTATTGGAAAAAGTTACAATGAGTTAGCATATTGGTCACCAGAATCCGGTTTCTCAGAGAACCTTGTCAACCAAATTAGTCCTTCTTCTGCTTCTGCTTCTGCCTCTGGTAGAGTACTTTTAAGTAATGCGAATTGGCCGGGTGGATCGAAATCAGTGCCAAAAGGTTGGGTTTATAATAATGGAGGAAGGAGGAGTTTGAAGATTGGTGTCCCTGCTGGGGATCCATGTCCTCAGTTTGTGAATGTGAGTTATAATCAGAGGTTGAATCAAACACATATCACTGGTTTCTCAATACATGTCTTTGAAGCAGTTGTCAAGCATTTACCTTATCAGCTTCCTTATCATTTGGTTCCATTTTATGGATCCTATGATGACATAGTTGTGCAAGTGAACAATAAGGTTTTTGATGCTGCTGTTGGTGATATTCAAGTAATGGACCAAAGATATGCATATGCTGAATTCTCTCATCCATATATTCCATCTGGTATTGCCATGGTGGCAAAAGTAAAGCCAGATAGATCAAAAGAAACATGGATGTTCATGGAAGCTTTCACAAAAGAAATGTGGTTGTTAATGGCAGCAATGCACATGTTTGTATCATTTGTTATATGGTTGATTGAACGTGAACACAATTCAGAGATTAAAGGGTTTGGAACCATGCTATGGTTTTCTGTCACCACATTATTCTTTGTACATAGAGAACCCGTGAAAACCAACTTGGCCAGAGCAGTGCTAGCACCATGGTTGTTTGCAATTCTGATAGTGACAGCATGCTTCACAGCAAGCCTCTCATCAATGATGACAGTGTCTCAACTTGAACCATCTGTGCCTGATATACAAACATTGCTAAGGACCAATGCAGTAGTAGGTTGCAATAAGAACACATTTTTGGTTCATTACTTGGTTAATGAACTGAAATTCAAGCCTGAGAATGTTAAGGGCTTTGAATCAATTAGTGATTTTCCAAGGGCTTTTGAGAAAAAAGAAATTGTAGCAGCTTTTACTATTGCACCTCATGCTGAAGTCTTTCTTGCTACACATTGTAAGGGATATATCAAAGCAGGACCTACCTTAAAGCTTGGTGGATTAGGCTTTGCATTTCCCAAGGGTTCAGCCCTATCAATTGACATATCAAGAGCAACATTGAAAGCAATAGAAAGTGGAGAAGTACAAAAACTAGAAGAAGAAATGTTATCTAAAACCACTTGTGGATCTCCAAATAGCAACATTATTCAAAATGTTGAACTTGGTCCCCAACCATTCTTTGGTCTATTTGGAATTTGTGGAGGCATTGCTGTCTTTGGTTTTTTAGTCTCAATGGCTCCTCTAATTGGAAAGAAGGGAAAGGGATTTATCAACTATTTAGAAGGGACATCATCATTGTTACAAATAGGATTAGGCATAATAAAATCTTGTGTTTCAAAGAATCTAATAAGCAAGTACATAGCTAGTAGTGCTCCAATCCAAGATGAAAATAAGAACTTAGAGGATGTCTCAAATAAAATGGAGCAAAATGTAGTGAATATTGAGTTGCCAATAACAACACACCACCACTTATGA 2754 0.3755 MSRWLSMLSLALLLPLIVWSKANDSKDHEREGRRSCIDYKILNIGAIIDFHSLIGMEQKIAMEVAIKDVNSILSCYKLVLNFNDSHRNPSSMVAADLANSKKVQAIIGTKLDGATLVNEIPQSSKEIPIISLTSSSEIRQIPLPNFIQIGNDITLNLQCIAAIICEFNWRKVTAIYEHDNGFTSYDSDILTKLSYSLSHVNSEVENYVAFPSMDTLLDPKTAIEHELKKLKNKSYNRVFLILQSSLEFATILFEKANQMGLMEKGSVWIITDDIASHLDSMDYSSVTFNMQGVIGCKTSFVELSQTFKRFNFAFRREFGLEYPEEEIENPYPSLSALRAYDAIWIIAHALRKSQSQGNFSMEELSKNIVATNHEGLSGKISFKDGKLLEPATFKIVNVIGKSYNELAYWSPESGFSENLVNQISPSSASASASGRVLLSNANWPGGSKSVPKGWVYNNGGRRSLKIGVPAGDPCPQFVNVSYNQRLNQTHITGFSIHVFEAVVKHLPYQLPYHLVPFYGSYDDIVVQVNNKVFDAAVGDIQVMDQRYAYAEFSHPYIPSGIAMVAKVKPDRSKETWMFMEAFTKEMWLLMAAMHMFVSFVIWLIEREHNSEIKGFGTMLWFSVTTLFFVHREPVKTNLARAVLAPWLFAILIVTACFTASLSSMMTVSQLEPSVPDIQTLLRTNAVVGCNKNTFLVHYLVNELKFKPENVKGFESISDFPRAFEKKEIVAAFTIAPHAEVFLATHCKGYIKAGPTLKLGGLGFAFPKGSALSIDISRATLKAIESGEVQKLEEEMLSKTTCGSPNSNIIQNVELGPQPFFGLFGICGGIAVFGFLVSMAPLIGKKGKGFINYLEGTSSLLQIGLGIIKSCVSKNLISKYIASSAPIQDENKNLEDVSNKMEQNVVNIELPITTHHHL 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03788 917 Pfam Receptor family ligand binding region 59 399 IPR001828 -
Aip06g03788 917 SUPERFAMILY Periplasmic binding protein-like I 42 454 IPR028082 -
Aip06g03788 917 SMART GluR_14 463 798 IPR001320 GO:0015276|GO:0016020
Aip06g03788 917 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 40 868 - -
Aip06g03788 917 CDD PBP1_GABAb_receptor_plant 43 419 IPR044440 -
Aip06g03788 917 Gene3D - 336 463 - -
Aip06g03788 917 PANTHER GLUTAMATE RECEPTOR 40 868 - -
Aip06g03788 917 CDD GluR_Plant 464 796 - -
Aip06g03788 917 Gene3D - 38 152 - -
Aip06g03788 917 PIRSF IGluLR_plant 3 865 IPR017103 -
Aip06g03788 917 SUPERFAMILY Periplasmic binding protein-like II 458 793 - -
Aip06g03788 917 Pfam Bacterial extracellular solute-binding proteins, family 3 488 794 IPR001638 -
Aip06g03788 917 Gene3D - 464 575 - -
Aip06g03788 917 Pfam Ligand-gated ion channel 795 827 IPR001320 GO:0015276|GO:0016020
Aip06g03788 917 Gene3D - 576 709 - -
Aip06g03788 917 Gene3D - 153 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03788 Aip-Chr6 135626511 135632130 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03788 40 856 Ion Channels AT3G51480 30.530 4.85e-112 363