Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03781 ATGGGAATCGTTTTGGACAGCAACTGCGAATCCATAGTGGTGTCGTTGGAGACACAGAAGGCGGTGCCGGCGCCCTTCCTCACCAAGACCTACGAGCTGGTGGACGACGCCGCCACCGATCACATTGTCTCGTGGGGAGAAGACGAAACCACCTTCGTTGTCTGGCGTCCTCCTGACTTCGCCCGCGACCTTCTTCCCAACTACTTCAAACATAATAATTTCTCCAGCTTCGTTCGCCAACTCAACACCTATGGTTTCAGAAAGATTGTACCTGATAGATGGGAATTTGCAAATGACTTCTTCAAGAAAGGGGAGAAGCATTTGTTGTGTGAGATTCATAGAAGAAAAACATCACACACTCATCCTCATCATCAACAACTACCATCATCCATCAACCATAACCAAAATCATTTTAACAACAATATTCATATTCTTCCCTCTACTACTACATTTTATCATCCTTTTCACCAACACAACAACCGAGTCAGCATCTCCCCTGACTCGGACGAGTTACCTACTTGGTGTGACTCGGACATTATTAGCAACACTACTACTACTACCACTACTACTGCTTCTTCATCAACGCTTACAGCACTCTCTCAAGACAACGAAAGATTAAGGAGAAGCAACAACATCTTAATGTCCGAACTAGCACACATGAAGAAGCTCTACAACGACATAATCTACTTCGTTCAGAATCATGTTAAGCCTGTCGCACCAAGCAACACTTACTCTTCTAGTTTCATTCTTCCACAACACCAACCTTCTTCTTCTTCAGCTACAACAACTAATTGCAACGCTTTCTCAATGTTGCATAAGCAAGTGCAACAACAACAACAACAACAACACCATGACTATTTGAATTCTCCAACAAACACATCGAGGAGTTCTATAACAATGATTGAAGACCAAAGTAGTAAGAGTTGCAAGACGAAGCTATTTGGGGTGTCTCTTCAATCCAATAAGAAAAGGGTGCACCCTGACTACGGATTTAGCCACGCTTTTGCGGAAACAAATAACAAGGCTCGTTTGGTGTTGGGAAATGATAATGATGATTATTTGGGATTGAATCTCATGCCTCCTTCTTAG 1089 0.4307 MGIVLDSNCESIVVSLETQKAVPAPFLTKTYELVDDAATDHIVSWGEDETTFVVWRPPDFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANDFFKKGEKHLLCEIHRRKTSHTHPHHQQLPSSINHNQNHFNNNIHILPSTTTFYHPFHQHNNRVSISPDSDELPTWCDSDIISNTTTTTTTTASSSTLTALSQDNERLRRSNNILMSELAHMKKLYNDIIYFVQNHVKPVAPSNTYSSSFILPQHQPSSSSATTTNCNAFSMLHKQVQQQQQQQHHDYLNSPTNTSRSSITMIEDQSSKSCKTKLFGVSLQSNKKRVHPDYGFSHAFAETNNKARLVLGNDNDDYLGLNLMPPS 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03781 362 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip06g03781 362 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip06g03781 362 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip06g03781 362 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip06g03781 362 Coils Coil 196 216 - -
Aip06g03781 362 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip06g03781 362 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 360 IPR027725 -
Aip06g03781 362 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip06g03781 362 Gene3D - 18 117 IPR036388 -
Aip06g03781 362 PANTHER BNAC06G00310D PROTEIN 15 360 - -
Aip06g03781 362 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03781 Aip-Chr6 135568632 135570010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03781 10 359 HSF AT1G46264 56.077 1.16e-114 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Aip06g03781 HSF_DNA-bind 2.7e-31 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03781 06 135568632 135570010 Aip06g03781 06 135568632 135570010 ECH
Aip06g03781 06 135568632 135570010 Aip07g02709 07 111430792 111432643 PCT