Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03773 ATGGGTGGCTGCAATGGTGGAAGCTTCCCTTGTGACTCATCAGAAGACTTCTCAGCTTTGTTCAACCAACTCCTCTCTCCGCCACCACAGCCCAATTTGACCATAACAAACCGGGTTCTTGGCCCTTCTTCTTCTGCTGTTTCTTCATCTGCTTTCCGTTTCTCTTCTTCTTCTCTTCATGATGATGATGATGATGATGATGAAGATCATCCCTTTCTTGATCACAATCCCAGTAACAATAACAACAACAACAATAATAATAATAATAATTGTAATGACGATTATATCCCTGCACCTCTTCATGACTCTGATGATGCTAACAACAACACTAGGCCACATCATCATCATCCAATTGAGAATGGTGAGACTTCTGAATTGCCATCAAGGCATGCCCCACCACCACGTACTTCTTCAAAGAGGAGCAGAGCTGCAGAATTTCATAATTTATCTGAAAAGCTACTACTACTGTTGGGCTCTAGAAGAAGGAGTAGGATTAATGAGAAGATGAAGGCTTTACAGAATTTAATTCCAAATTCTAACAAGACAGACAAAGCTTCAATGCTAGATGAGGCTATAGAATATTTAAAGCAGCTTCAGCTTCAAGTGCAGATGTTAATGATGAGAAATGGTTTGAGCTTACATCCAATGTCACTACCAGGAGGATTGAGACCTATGATCCTGCCACATACTGGTGTGGATTTTGATGAAGGTAACAGATTTCAGAACTCTATCAATGGTGGGGCTCCATCATCATATACAGCCGACGAAAGCTTGGTGGCGCGGCCGCCTTTTGGTTTTCACAGACCATGCAGCATCTCAAACCAATCTGCTGCTATGCCATCATTGACAAATCTAGCTACTTCAGATAACTCATCAAGCTTTCAATCCTCTATCAAGGATGCACACATGCCATAA 915 0.4175 MGGCNGGSFPCDSSEDFSALFNQLLSPPPQPNLTITNRVLGPSSSAVSSSAFRFSSSSLHDDDDDDDEDHPFLDHNPSNNNNNNNNNNNNCNDDYIPAPLHDSDDANNNTRPHHHHPIENGETSELPSRHAPPPRTSSKRSRAAEFHNLSEKLLLLLGSRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMMRNGLSLHPMSLPGGLRPMILPHTGVDFDEGNRFQNSINGGAPSSYTADESLVARPPFGFHRPCSISNQSAAMPSLTNLATSDNSSSFQSSIKDAHMP 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03773 304 Pfam Helix-loop-helix DNA-binding domain 160 199 IPR011598 GO:0046983
Aip06g03773 304 MobiDBLite consensus disorder prediction 106 123 - -
Aip06g03773 304 MobiDBLite consensus disorder prediction 22 145 - -
Aip06g03773 304 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 139 209 IPR036638 GO:0046983
Aip06g03773 304 CDD bHLH_AtPIF_like 142 211 - -
Aip06g03773 304 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 55 302 IPR031066 -
Aip06g03773 304 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 198 IPR011598 GO:0046983
Aip06g03773 304 MobiDBLite consensus disorder prediction 283 304 - -
Aip06g03773 304 PANTHER TRANSCRIPTION FACTOR SPATULA 55 302 - -
Aip06g03773 304 MobiDBLite consensus disorder prediction 75 94 - -
Aip06g03773 304 MobiDBLite consensus disorder prediction 22 56 - -
Aip06g03773 304 Gene3D - 137 208 IPR036638 GO:0046983
Aip06g03773 304 SMART finulus 148 204 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03773 Aip-Chr6 135486063 135489928 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03773 142 227 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 78.161 4.36e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip06g03773 HLH 1e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03773 06 135486063 135489928 Aip06g03773 06 135486063 135489928 ECH