Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03770 ATGGCGCAGATTCAGGTGCAGCACCAGAGCGCGGTTTCGGCTCCACCGCAGAACGGCGTCGCAGCCGCTCCTTCGCCGCCGCTGCCGGCGGGTGCTGCGAATGGGACGAACCAGTTTGTTACGACGTCGTTGTACGTCGGGGATCTGGACCCTGAGGTTGACGAGAGGCACCTCTACGATTTGTTCAACCAGGTCGGGCAAGTGGTTTCGGTTCGTGTCTGCAGTGATTTGACCACTCGCCGATCGCTCGGTTACGGTTACGTTAATTACAGTAACCCTCAGGATGCTGCACGAGCAATAGATGTACTGAATTTCACTCCACTGAACAACAAGCCCATTAGGATCATGTATTCTCATCGGGATCCTAGCATTCGCAAGAGTGGGACTGCAAACATTTTTATCAAGAATTTGGATAAGGCAATTGATCACAAAGCTTTACATGATACTTTTTCTTCTTTTGGACATATTCTTTCTTGCAAAATAGCGACTGATGCTTCTGGCCAGTCAAAAGGCTACGGTTTTGTTCAATTCGACACCGAGGAGTCTGCACAGAATGCAATCGATAAGTTAAATGGCATGCTGATCAATGATAAGCAGGTCTATGTGGGTCATTTCTTACGTAAGCAAGATAGAGATAATGCTTTGGGTAAGACGACATTCAATAATGTCTATGTGAAAAACCTGTCTGAGTCGGTGACAGATGATGACTTGAAGAAAATTTTTGGAGAGTATGGGACAATCACTAGTGCTGTAGTAATGAGAGATGCAGATGGTAAATCAAAGTGTTTTGGGTTTGTTAATTTTGAAAACCCAGAAGATGCTGCCAAAGCTGTTGAGTCACTCAATGGAAAGAAAATTGATGACAAGGAGTGGTATGTTGGAAAAGCCCAGAAAAAATCTGAGCGAGAGAATGAGCTGAGAAGACGGTTTGAGCAAACTGTTAAAGAATCTGTTGATAAATACCAAGGTGTGAACTTGTATCTCAAGAACTTGGATGATACCATCAATGATGAAAAGCTAAGAGAACTCTTCTCCGAGTTTGGTTCAATAACCTCTTGCAAGGTTATGCGCGATCCAAATGGAATCAGTAGAGGATCAGGATTTGTTTCATTTTCAACTCCTGAGGAAGCATCTCGAGCTCTTACGGAGATGAATGGTAAAATGATTGCTGGGAAGCCTCTGTACGTTGCCCTTGCTCAGAGAAAGGAAGAGAGAAGAGCTAGGTTACAGGCACAATTTTCACAAATGAGGCCTGTTGCGATGACACCTTCTGTTGCACCACGGATGCCACTTTATCCTCCTGGTGCTCCTGGTTTAGGGCAACAATTTTTGTACGGGCAAGGACCCCCAGCCATGATTCCCCCACAGGCTGGATTTGGCTACCAGCAGCAACTTGTTCCTGGGATGAGGCCCGGTGGTGCTCCAATGCCTAGCTTCTTTGTTCCAATGGTTCAGCAGGGTCAGCGCCCAGGTGGACGACGAGNNNNNAGGAGCTGGTCCTGTGCAACAACCTCAGCAGACAGTGCCAATGATGCAGCAACAGTTGCTTCCAAGGGGACGCTATATGCGTTACCCTCCTGGGGGTCGCAATATGCAAGATGTTCCACTCCCAGGGGTTGCTGGAGGAATGTTGTCAGTCCCCTATGA 1647 0.4699 MAQIQVQHQSAVSAPPQNGVAAAPSPPLPAGAANGTNQFVTTSLYVGDLDPEVDERHLYDLFNQVGQVVSVRVCSDLTTRRSLGYGYVNYSNPQDAARAIDVLNFTPLNNKPIRIMYSHRDPSIRKSGTANIFIKNLDKAIDHKALHDTFSSFGHILSCKIATDASGQSKGYGFVQFDTEESAQNAIDKLNGMLINDKQVYVGHFLRKQDRDNALGKTTFNNVYVKNLSESVTDDDLKKIFGEYGTITSAVVMRDADGKSKCFGFVNFENPEDAAKAVESLNGKKIDDKEWYVGKAQKKSERENELRRRFEQTVKESVDKYQGVNLYLKNLDDTINDEKLRELFSEFGSITSCKVMRDPNGISRGSGFVSFSTPEEASRALTEMNGKMIAGKPLYVALAQRKEERRARLQAQFSQMRPVAMTPSVAPRMPLYPPGAPGLGQQFLYGQGPPAMIPPQAGFGYQQQLVPGMRPGGAPMPSFFVPMVQQGQRPGGRRXXRSWSCATTSADSANDAATVASKGTLYALPSWGSQYARCSTPRGCWRNVVSPL 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03770 548 CDD RRM2_I_PABPs 128 204 IPR045305 -
Aip06g03770 548 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Aip06g03770 548 SMART rrm2_1 43 116 IPR003954 GO:0003676
Aip06g03770 548 SMART rrm2_1 325 397 IPR003954 GO:0003676
Aip06g03770 548 SMART rrm2_1 222 294 IPR003954 GO:0003676
Aip06g03770 548 SMART rrm2_1 131 203 IPR003954 GO:0003676
Aip06g03770 548 CDD RRM1_I_PABPs 43 122 - -
Aip06g03770 548 SMART rrm1_1 325 397 IPR000504 GO:0003723
Aip06g03770 548 SMART rrm1_1 43 116 IPR000504 GO:0003723
Aip06g03770 548 SMART rrm1_1 222 294 IPR000504 GO:0003723
Aip06g03770 548 SMART rrm1_1 131 203 IPR000504 GO:0003723
Aip06g03770 548 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 43 501 IPR006515 GO:0003723
Aip06g03770 548 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 207 IPR000504 GO:0003723
Aip06g03770 548 Gene3D - 125 210 IPR012677 -
Aip06g03770 548 Gene3D - 211 310 IPR012677 -
Aip06g03770 548 Gene3D - 311 414 IPR012677 -
Aip06g03770 548 Gene3D - 1 124 IPR012677 -
Aip06g03770 548 MobiDBLite consensus disorder prediction 477 496 - -
Aip06g03770 548 SUPERFAMILY RNA-binding domain, RBD 42 211 IPR035979 GO:0003676
Aip06g03770 548 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 221 298 IPR000504 GO:0003723
Aip06g03770 548 PANTHER RNA BINDING PROTEIN 31 495 - -
Aip06g03770 548 SUPERFAMILY RNA-binding domain, RBD 221 405 IPR035979 GO:0003676
Aip06g03770 548 CDD RRM3_I_PABPs 220 299 - -
Aip06g03770 548 MobiDBLite consensus disorder prediction 6 35 - -
Aip06g03770 548 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Aip06g03770 548 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 132 200 IPR000504 GO:0003723
Aip06g03770 548 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 326 394 IPR000504 GO:0003723
Aip06g03770 548 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 223 291 IPR000504 GO:0003723
Aip06g03770 548 PANTHER POLYADENYLATE-BINDING PROTEIN 31 495 - -
Aip06g03770 548 CDD RRM4_I_PABPs 323 401 - -
Aip06g03770 548 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 324 401 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03770 Aip-Chr6 135435411 135440562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03770 1 484 Eukaryotic Initiation Factors Gene Family AT4G34110 71.281 0.0 738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03770 06 135435411 135440562 Aip10g01878 10 55443671 55448728 ECH
Aip06g03770 06 135435411 135440562 Aip06g03770 06 135435411 135440562 ECH