Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03768 ATGTTATATATAGTACGTAGCCATAGATTTCTAAACATGGAAGATAGGAATTATTTTTGTTCTACTAACTCATCAGTGATAAGTCGGAATAGAAATAATAGAAGTAGAAGTGATAACAGAAGTCCTGGTAAGACGAAATCAAAAGTTCAAAAAGAAAAATCAAACAAACCCTATAGAGGGATAAGGATGAGGAAGTGGGGAAAATGGGTGGCGGAGATTCGAGAACCTCACAAGAGGTCAAGAATATGGTTAGGCTCGTACATTACACCGGTAGCGGCCGCGCGAGCATACGACACGGCCGTGTTCTACCTCCGAGGCCCCTCGGCCCGGCTCAACTTTCCGGAGTTGTTGTTTCAAGATGAAGGAAACAAGGATGGTGGTTGTTTGGAACCAGAATGCGACATGTCAGCAGATTCCATACGCAAAAGAGCAACACAAGTTGGAGCAAGAGTGGATGCTCTCCAAACAGCACTTAATCATGCATCTTCCAACAATAATATTAATAATTGTTCATCAACTTCCTCTCTCCTTCAGAAACCTGATTTAAATGAGTTTCCTAAACCTGATGATGAAGGAGATTCTCTTGCTTTCTAG 594 0.4175 MLYIVRSHRFLNMEDRNYFCSTNSSVISRNRNNRSRSDNRSPGKTKSKVQKEKSNKPYRGIRMRKWGKWVAEIREPHKRSRIWLGSYITPVAAARAYDTAVFYLRGPSARLNFPELLFQDEGNKDGGCLEPECDMSADSIRKRATQVGARVDALQTALNHASSNNNINNCSSTSSLLQKPDLNEFPKPDDEGDSLAF 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03768 197 MobiDBLite consensus disorder prediction 33 57 - -
Aip06g03768 197 Pfam AP2 domain 58 106 IPR001471 GO:0003700|GO:0006355
Aip06g03768 197 SMART rav1_2 57 120 IPR001471 GO:0003700|GO:0006355
Aip06g03768 197 Gene3D AP2/ERF domain 57 115 IPR036955 GO:0003700|GO:0006355
Aip06g03768 197 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 14 191 - -
Aip06g03768 197 CDD AP2 58 116 IPR001471 GO:0003700|GO:0006355
Aip06g03768 197 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 14 191 - -
Aip06g03768 197 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Aip06g03768 197 PRINTS Ethylene responsive element binding protein signature 96 116 IPR001471 GO:0003700|GO:0006355
Aip06g03768 197 SUPERFAMILY DNA-binding domain 57 115 IPR016177 GO:0003677
Aip06g03768 197 MobiDBLite consensus disorder prediction 178 197 - -
Aip06g03768 197 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700|GO:0006355
Aip06g03768 197 MobiDBLite consensus disorder prediction 29 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03768 Aip-Chr6 135405774 135406546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03768 56 193 AP2-EREBP Transcription Factor Family AT2G23340 58.904 6.02e-50 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aip06g03768 AP2 6.6e-10 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03768 06 135405774 135406546 Aip06g03768 06 135405774 135406546 ECH