Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03738 ATGGATCGAGTTAAGGGCCCGTGGAGCCCGGAGGAGGACGAGACGCTGAGGAGGCTGGTGGGAGCCCACGGGCCGAGAAACTGGACTATTATCAGCAAGTCCATTCCAGGCCGATCCGGCAAGTCGTGCCGGTTGCGGTGGTGCAACCAGCTGTCACCGGAGGTGGAGCACCGCGCATTCACGCCGGAGGAGGACGATATCATCGTCAGAGCCCACGCTGAGTTCGGAAACAAGTGGGCCACGATAGCCCGGTTACTTAACGGAAGAACCGATAACGCCGTCAAGAATCACTGGAACTCTACGCTCAAAAGGAAATGCCGCTCTTCTGCTTCTGACGCCGTCACCGTCGCCGTTTACCCCGACGCGCAGCCTCTTAAAAGATCCGCCAGTGTCGGCCCGTGCCACGTTACCACGCCTAGCAGCCCGTCGGGCTCTGAGCTCAGCGATCCGGGGCTTCCCTCTCTGTCAGCTCCGGGTTCGGATCCAAGAACGTTGCTGAGCTTGTCGCTGCCGGGATCATCGGGATCAGGCGCAGGCTCAGATTCGATTAAAGATGGGCTTGGTTCTGGGCTTAGTCCTGATCCTGACCCGGCCCAAATGTTCAGTCCGGAGTTCTTGGCGATGATGCAAGAAATGGTGAGGAAAGAGGTTAGGAATTACATGTCGATGGTTGAAGAGAACGGGGTTCGCATGCAGCAGACGGAAGCGATTCGAAACGGTGTTATGAAACGAATGGGAATTAGAAACGGAATAGAGAGAGACAAGCCCAATTCCATTTCATATTTCCTAAATAGAAGCCAAGCGCACATCAAGTGGGTACTTTGGGAATCCTGGGCTGAGTTTGTTGGTAGTGTATTTAGTGATGGCCATAAGGTAGCACCTTATGAACGTCCTGTACTAAGCAAGACTTACCTTTTTCCTGAGTCCCCTGCTAGACTTCCTGGTTTCCATGTTTGTGTTGGAAGTGGAAGAGAAAGATTGCTTCCTGAGTGGTATAATGAAAAAGATGGCTGGGAAGGTGGTGAAGCTTCATTCCCGAAGATCACaacgtgtagttcaaggCGTTTCTCAATTCTTCTGTCGTCCGCTGCGTTTTCATCTTCTGTTCACGCATTGCCGCCGCTGTCTGACTGCACAATAGTGACAACACAACTACCTGGGACTTCTTCTCCATTCAGGAATAATTCTGAATTTAATTATCCTAAAAGAAATAATATTTTTGATAAAGATGGTGAAGATGATGATGTTGATACTATAGAAGATGAAGATATTAGAGGATTTCAGTTTTGA 1290 0.4992 MDRVKGPWSPEEDETLRRLVGAHGPRNWTIISKSIPGRSGKSCRLRWCNQLSPEVEHRAFTPEEDDIIVRAHAEFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCRSSASDAVTVAVYPDAQPLKRSASVGPCHVTTPSSPSGSELSDPGLPSLSAPGSDPRTLLSLSLPGSSGSGAGSDSIKDGLGSGLSPDPDPAQMFSPEFLAMMQEMVRKEVRNYMSMVEENGVRMQQTEAIRNGVMKRMGIRNGIERDKPNSISYFLNRSQAHIKWVLWESWAEFVGSVFSDGHKVAPYERPVLSKTYLFPESPARLPGFHVCVGSGRERLLPEWYNEKDGWEGGEASFPKITTCSSRRFSILLSSAAFSSSVHALPPLSDCTIVTTQLPGTSSPFRNNSEFNYPKRNNIFDKDGEDDDVDTIEDEDIRGFQF 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03738 429 Gene3D - 284 339 IPR036188 -
Aip06g03738 429 PANTHER MYB PROTEIN-RELATED 2 155 - -
Aip06g03738 429 CDD SANT 7 49 IPR001005 -
Aip06g03738 429 Gene3D - 4 56 - -
Aip06g03738 429 SUPERFAMILY Homeodomain-like 2 98 IPR009057 -
Aip06g03738 429 MobiDBLite consensus disorder prediction 133 150 - -
Aip06g03738 429 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 106 IPR017930 -
Aip06g03738 429 Pfam Myb-like DNA-binding domain 59 101 IPR001005 -
Aip06g03738 429 Pfam Myb-like DNA-binding domain 5 51 IPR001005 -
Aip06g03738 429 CDD SANT 59 102 IPR001005 -
Aip06g03738 429 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
Aip06g03738 429 MobiDBLite consensus disorder prediction 160 180 - -
Aip06g03738 429 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 2 155 - -
Aip06g03738 429 SMART sant 56 104 IPR001005 -
Aip06g03738 429 SMART sant 4 53 IPR001005 -
Aip06g03738 429 Gene3D - 58 118 - -
Aip06g03738 429 ProSiteProfiles Myb-like domain profile. 1 51 IPR001005 -
Aip06g03738 429 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 55 IPR017930 -
Aip06g03738 429 MobiDBLite consensus disorder prediction 128 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03738 Aip-Chr6 134982571 134991782 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03738 1 229 MYB Transcription Factor Family AT4G37260 49.638 2.04e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip06g03738 Myb_DNA-binding 2.8e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03738 06 134982571 134991782 Aip05g00604 05 7403598 7405576 ECH
Aip06g03738 06 134982571 134991782 Aip01g01017 01 20991417 20992367 ECH
Aip06g03738 06 134982571 134991782 Aip06g03738 06 134982571 134991782 ECH