Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00887 ATGTGTGCTTCTCTTTTCGTACTATTGTCTATCGCGCTCAGCCCTAGCCTCCATCGTCACCACCATTCTTCTCACCACCTCCGTCCCTCATGCTTCGGTCGTCTCTCAACTGTCCAACCGGTCGCCTCCAACCCTTCTGTGGACTTGCGAATTACAAGCTTCTCTCTGTCATTTGTCGCACGTCGTGAGTTTTTGTACTCGTCGCCCGTCGTTCATTGCGTCCTCATCACCGACGTTCTTGCTCCCTCTCCCTCATACTCTGCTAATTGCTCACTGCTCAGAGTCATACAAAAAGAGAAGCTTGCTAGAATTTATGATGTTAAGGATCCCAACACTGCGTTTGTGTTCAAGTTCCGCACCCATTTTGGAGGGGGCACATCCAATAGTTTTGGTTTGATTTATGACACTGTTGAGAATGCTAAGAAGTATGAGCCTAAGTATAGACTTATTAAAGTAAGATAA 462 0.4654 MCASLFVLLSIALSPSLHRHHHSSHHLRPSCFGRLSTVQPVASNPSVDLRITSFSLSFVARREFLYSSPVVHCVLITDVLAPSPSYSANCSLLRVIQKEKLARIYDVKDPNTAFVFKFRTHFGGGTSNSFGLIYDTVENAKKYEPKYRLIKVR 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00887 153 Pfam Ribosomal protein S24e 98 151 IPR001976 GO:0003735|GO:0005840|GO:0006412
Aip06g00887 153 PANTHER 40S RIBOSOMAL PROTEIN S24 70 151 - -
Aip06g00887 153 PANTHER 40S RIBOSOMAL PROTEIN S24 70 151 IPR001976 GO:0003735|GO:0005840|GO:0006412
Aip06g00887 153 Gene3D - 90 153 - -
Aip06g00887 153 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 95 151 IPR012678 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00887 Aip-Chr6 12248796 12250245 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g00887 62 151 Cytoplasmic Ribosomal Protein Gene Family AT5G28060 55.556 1.51e-30 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g00887 K02974 - gmx:100499852 107.457