Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00101 ATGAGCGCATGCCCTCTCTATGGTTCCATAATCAAGCCACCATCACCATCAACAACCCTATCCCTTCTTCTTCGTAATCCTCCATTATCATGCAACTTCCCCACTCTCATTCTCAGGAACCGAAATTCCATCTTTGCCCTTCACTCATACGACGCCGTTTCTACTCAAAACGCCATTCGCTTTGACGTAGAAGATTCCACCGCCACTGATTCAGCTGAGGTAGTAGTGGAACCTGCTGAAGCACCTCCATCAGACAGTGTTGTTGCTGATGCGAAACCTCAAGAGAAGTTAACCAAGCTTCGGAAGAAGAAAGTACTATTTCAAGAAGACGATGACACCATCGATAACCGCTTCAAGCTCCGCAATGGACGAGAGGTATTTGAAGAGAAAGCTTATTTGGTAGGGGTAGAAAGGAAGGGAGATAATGAGGATGTGTTTGGGATAGAAGAATCTCTGAGGGAATTGGAACAGCTAGCTGACACTGCTGGCTTAATGGTTGTTGGCTCTACCTACCAGAAGCTTACTTCTCCAAACCCAAGGACATACATTGGCTCCGGAAAGGTTTCTGAAATTAAGAGTGCAATCCATGCCTTGGACGTTGAAACTGTAATTTTTGATGATGAGCTATCACCTGGGCAATTGCGCAACCTGGAAAAGGTTTTTGGTGGGGACGTGAGAGTTTCATTAGCACAAATGGAATACCAACTACCTCGTCTAACAAAAATGTGGACACATCTTGAGCGTCAATCAGGAGGAAAGGTGAAGGGAATGGGAGAAAAACAAATAGAAGTGGACAAGCGTATTTTGCGAAACCAAATTGGTGCACTTAAGAAAGAGCTAGAATCTGTTAGGAAACACCGACAGCAGTACCGTAACAGGCGTTTCTCAGTACCTGTGCCGGTGGTAGCCTTGGTTGGGTACACAAATGCTGGAAAGAGTACCCTTTTAAATCAATTAACTGGGGCAGATGTTTTTGCTGAGGATAAATTATTTGCAACTTTAGATCCAACTACAAGGAGGGTCCAGCTGAAGAATGGAAAGGAGTTTCTCCTAACAGACACTGTTGGTTTTATTCAGAAATTGCCAACTCAACTGGTTGCTGCCTTCAGAGCTACGCTGGAGGAGATATCAGAGTCGTCACTTCTGGTGCATGTAGTTGATATCAGTCATCCCCTGGCAGAGCAACAAATAAATGCTGTTGACAAAGTTCTGTCAGAACTAGATGTATCATCTATTCCAAGATTGATGATTTGGAACAAGGTTGATAAGGCTAGTGATCCCCAGAAAATCAGGTTAGAAGCTGAAAATAGAGATGATGTTGTATGCATATCTGCATTAACGGGTGATGGCCTACCAGAATTCTGTAACGCAGTTCAAGAAAAATTGAAGGACTCCATGGTGTGGGTTGAAGCTTTGGTACCTTTTGAAAATGGAGACCTTCTCAGCACCATACACCAAGTTGGAATGGTTGAGAAAACTGAATACACAGAGCAAGGGACATATATCAAGGCACATGTGCCCCTTCGTTTTGCAAGATTGCTGACACCCATGAGGCAAATGTGTGTATCCCAATCTTAA 1578 0.4385 MSACPLYGSIIKPPSPSTTLSLLLRNPPLSCNFPTLILRNRNSIFALHSYDAVSTQNAIRFDVEDSTATDSAEVVVEPAEAPPSDSVVADAKPQEKLTKLRKKKVLFQEDDDTIDNRFKLRNGREVFEEKAYLVGVERKGDNEDVFGIEESLRELEQLADTAGLMVVGSTYQKLTSPNPRTYIGSGKVSEIKSAIHALDVETVIFDDELSPGQLRNLEKVFGGDVRVSLAQMEYQLPRLTKMWTHLERQSGGKVKGMGEKQIEVDKRILRNQIGALKKELESVRKHRQQYRNRRFSVPVPVVALVGYTNAGKSTLLNQLTGADVFAEDKLFATLDPTTRRVQLKNGKEFLLTDTVGFIQKLPTQLVAAFRATLEEISESSLLVHVVDISHPLAEQQINAVDKVLSELDVSSIPRLMIWNKVDKASDPQKIRLEAENRDDVVCISALTGDGLPEFCNAVQEKLKDSMVWVEALVPFENGDLLSTIHQVGMVEKTEYTEQGTYIKAHVPLRFARLLTPMRQMCVSQS 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00101 525 TIGRFAM GTP_HflX: GTP-binding protein HflX 223 462 IPR016496 GO:0005525
Aip06g00101 525 Gene3D - 225 285 - -
Aip06g00101 525 TIGRFAM small_GTP: small GTP-binding protein domain 301 454 IPR005225 GO:0005525
Aip06g00101 525 PANTHER GTP-BINDING PROTEIN 6-RELATED 225 510 - -
Aip06g00101 525 Pfam HflX C-terminal domain 432 500 IPR045498 -
Aip06g00101 525 PRINTS GTP1/OBG GTP-binding protein family signature 302 322 IPR006073 GO:0005525
Aip06g00101 525 PRINTS GTP1/OBG GTP-binding protein family signature 369 387 IPR006073 GO:0005525
Aip06g00101 525 PANTHER GTP-BINDING PROTEIN HFLX 225 510 IPR016496 GO:0005525
Aip06g00101 525 Coils Coil 266 293 - -
Aip06g00101 525 CDD HflX 259 462 IPR030394 GO:0005525
Aip06g00101 525 Gene3D - 299 467 IPR027417 -
Aip06g00101 525 ProSiteProfiles HflX-type guanine nucleotide-binding (G) domain profile. 300 466 IPR030394 GO:0005525
Aip06g00101 525 Hamap GTPase HflX [hflX]. 152 491 IPR016496 GO:0005525
Aip06g00101 525 PANTHER GTP-BINDING PROTEIN 6-RELATED 100 226 - -
Aip06g00101 525 Gene3D - 142 224 IPR042108 -
Aip06g00101 525 Pfam GTP-binding GTPase Middle Region 224 294 IPR032305 -
Aip06g00101 525 Pfam 50S ribosome-binding GTPase 302 420 IPR006073 GO:0005525
Aip06g00101 525 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 300 472 IPR027417 -
Aip06g00101 525 Pfam GTP-binding GTPase N-terminal 149 223 IPR025121 -
Aip06g00101 525 PANTHER GTP-BINDING PROTEIN HFLX 100 226 IPR016496 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00101 Aip-Chr6 958939 963783 Dispersed/Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00101 06 958939 963783 Aip06g00101 06 958939 963783 ECH