LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip06g00093	ATGATGGGAACTGATCAGGAGGGAAAGCAATTGATGAGGAAGCAAGCACAAACCAATTCAAGAAAGGGTTGTATGAGGGGAAAAGGAGGCCCTCAGAATGCAACATGCACCTACAAAGGTGTAAGGCAAAGGATTTGGGGCAAATGGGTTGCCGAGATACGCGAACCACGTCGTGGTTCGCGTATCTGGCTTGGGACGTTCAATACGTCCCATGAAGCCGCCTTGGCCTACGATGCTGCGGCGCGTAAGCTTTACGGCCATGATGCTAAGCTCAATCTCCCAGACCTTCAACCCTCTATTTCCACAACTCAGGATATTCAAAGAGACAACCTTCTTCAACAACAATCTCACATGATGATTAATCAGCACAACATTGGCACCTCTTTCAACAACAACAACAATCACCTCAAACCTTTGGTGCCCATGGCTGATGAGGTTGGTGTTACACCAATTTACACCAATGAAGCCATTATGTCTCTTCCCTTAAGAGATGATATCAACAACATCAATAACTTCAACACCAAGCCTATAATTTTGGAAAGCTTCCAAAACCCAACAAAGCCTATGGACAATAATATTATCAATAATAATAATAATGTAGAGAAGCCAAGTTCCTCATTTTCTGAGCCTGATTTTTATGATGATTCTATTTGGACAGAAGCTGCTGCATCTTTGAACTTTCCTATGCTTTCAGATGCTAATAATGGTTTTTATGAAGCTGGGGATATGGCTTGGATATGCAAGGTTGATGATGGTGAATAA	762	0.4252	MMGTDQEGKQLMRKQAQTNSRKGCMRGKGGPQNATCTYKGVRQRIWGKWVAEIREPRRGSRIWLGTFNTSHEAALAYDAAARKLYGHDAKLNLPDLQPSISTTQDIQRDNLLQQQSHMMINQHNIGTSFNNNNNHLKPLVPMADEVGVTPIYTNEAIMSLPLRDDINNINNFNTKPIILESFQNPTKPMDNNIINNNNNVEKPSSSFSEPDFYDDSIWTEAAASLNFPMLSDANNGFYEAGDMAWICKVDDGE	253

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip06g00093	253	Pfam	AP2 domain	37	87	IPR001471	GO:0003700\|GO:0006355
	Aip06g00093	253	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D	13	234	-	-
	Aip06g00093	253	Gene3D	AP2/ERF domain	37	95	IPR036955	GO:0003700\|GO:0006355
	Aip06g00093	253	PRINTS	Ethylene responsive element binding protein signature	60	76	IPR001471	GO:0003700\|GO:0006355
	Aip06g00093	253	PRINTS	Ethylene responsive element binding protein signature	38	49	IPR001471	GO:0003700\|GO:0006355
	Aip06g00093	253	CDD	AP2	36	96	IPR001471	GO:0003700\|GO:0006355
	Aip06g00093	253	ProSiteProfiles	AP2/ERF domain profile.	37	94	IPR001471	GO:0003700\|GO:0006355
	Aip06g00093	253	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C	13	234	-	-
	Aip06g00093	253	SMART	rav1_2	37	100	IPR001471	GO:0003700\|GO:0006355
	Aip06g00093	253	MobiDBLite	consensus disorder prediction	1	33	-	-
	Aip06g00093	253	SUPERFAMILY	DNA-binding domain	37	95	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip06g00093	Aip-Chr6	901781	904029	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Aip06g00093		AP2	3.8e-15	CL0081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip06g00093	06	901781	904029	Aip06g00093	06	901781	904029	ECH
	Aip06g00093	06	901781	904029	Aip07g02494	07	104551366	104552709	PCT