Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip06g00071 | ATGGCGGTGGAGAGTTCACAGGATTTGTTGAAGAAGCTCGAGTACTTGTCTCTCGTTTCGAAGGTTTGCACAGAAATGGAGTCTCACACCGGAAACGCTGATAAGGTACTTGCTGAGTTCATCACCGAGTTGGGTCGATCTTCCGAGAACTTCGAAGAATTCGATGCGAAACTGAAGGAGAACGGTGCCGAATTGCCCGATTATTTTGTCCGGACACTTCTCAAGATAATCCACGCTATTCTCCCTCCGAAGAAGGGTTCCGGCAACAGCGACAGTAAGGGTTCGAAGCTGGACGGTGGTGGTTCCAAGGGGAAGTTCAAGGCACTGGCTATTGCGGATGATAGGGACAGGGTTAAGGAGCTGCAGAAGGAGATTGAAGCTGAAGCCAAAGAGGAACAAGGTGGTGACAGAGACAGAGAGATAAACGGTGAAGATGGGGACAGAGAAACAGACAGAGGTAGAAGGGAAAGAATTGGCAGAAGGGACAGGTATGATAAATATGATAGAGATGAAAGGTATAGTGATAGAGATAGGAATAGAAATATAGATATAGATATGGATAGAGATAGAGATAGAGATAGAGATAGAGATTATGATGATGAAAGAAGGGATTCTAGGAGAAGGGGAAGGGATAGAGAGATTAATAGTGATAGTGGTAGGGATAATGATAAGGATAGATATGAGAGGTGGAGGTTAAATGGGTATGAAGATGAAAATGATGGTTATGGCAAAGAAGATGATGGTGGTGGCTGTGGTGTTGAGAGGAAAGGTTGGAGGGAACCGATACATGGTGGGGGTGGTGAAGTTGAGTTGTATAAGATTTATAAAGGGAGGGTTTCAAGGGTGATGGATACGGGTTGCTTTGTTCAGTTGGATGACGATAGAGGGAAGGAAGGACTGGTGCATGTTTCGCAGATTGCAACTAAGAGGATTAGTAATGCGAAGGATGTGGTGAAGCGGGATCAGGAGGTTTATGTGAAGGTAATATCTGTTTCTGGTCACAAGTTGAGTCTGTCAATGAGGGATGTTGATCAGCATACTGGCAAAGATCTTCCGTTGAAGAAAAGTGATGAGGACACATTTCGGATTCAGGATTTAAAGGATGGGGCAGTTGCAAGGACGGGTCTGTCAGGTATCGGGATTGTGGAGGAGGATGATATGGGTAAATCACGGAGGCCTTTGAAGAGGATGAGCTCTCCTGAGAGATGGGAGGCAAAGCAGTTGATTGCTTCAGGTGTTTTGAGTGTTTCAGAGTACCCAACTTATGACGAGGAGGAGGATGGGCTGATGTACGAGGAGGAAGGTGCTGAGGAGGAGCTTGAGATTGAGTTGAATGAGGATGAACCGGCATTTTTGCAAGGGCAGAGCAGGCATAAAATGGATACATCTCCTGTCAAGATTTTCAAAAATCCAGAGGGTTCTCTTGGTCGTGCTGCTGCCCTCCAGTCTGCACTTATAAAGGAGCGTAGAGAAGTACGAGAACAGCAGCAGCGCACCATGCTTGATTCTATTCCAAAGGATCTCAATCGTCCTTGGGAAGACCCTATGCCAGAGTCTGGTGAAAGGCATCTTGCTCAGGAGCTTAGGGGTGTTGGTTTGTCAGCCTATGATATGCCAGAATGGAAGAAGGATGCTTATGGGAAGACCATTACTTTTGGGCAAAGGTCAAAGCTTTCTATTCAAGAACAGAGGCAGAGTCTCCCAATTTACAAGTTAAAAAAAGAATTGATTCAGGCTGTCCATGATAATCAGGTGTTGGTGGTAATTGGTGAAACAGGCTCAGGCAAAACTACTCAGATCACACAGTATCTTGCTGAAGCAGGTTACACCACAAGAGGTAAAATTGGATGCACTCAACCTCGTAGGGTGGCTGCAACGTCAGTTGCAAAGAGAGTGGCAGAAGAGTTTGGATGTCAATTGGGAGAGGAAGTTGGTTATGCCATTCGGTTTGAAGATTCTACGGGACCAGATACTGTAATCAAGTACATGACCGAAGGTATGCTTCTTAGGGAAATACTGGCTGATGAGAATCTGTCACAGTATTCTGTCATAATGCTTGATGAAGCCCATGAAAGGACCATTAATACTGATGTTCTTTTTGGACTGCTTAAGCAGCTAGTGCAGTGTAGACCTGAGTTGCGATTGATTGTCACATCTGCCACTCTGGATGCAGAGAAGTTCTCAGGATATTTCTTTAACTGTAACATCTTTACAATACCCGGGAGAACTTTCCCTGTGGAGATTCTTTATAGTAAGCAGCCAGAAAGTGATTACTTAGATGCAGCTTTAATCACTGTCCTACAGATCCACTTGACTGAACCTGAAGGAGACATTCTTCTCTTCTTGACTGGCCAAGAGGAGATTGATTTTGCTTGTCAATCTCTCTACGAAAGAATGAAGGGATTAGGTAAGAATGTTCCAGAACTGATAATATTACCTGTTTATAGTGCCCTTCCTAGTGAAATGCAGTCTAGGATATTTGACCCTGCTCCTCCCGGGAAAAGGAAAGTGGTTGTGGCAACTAACATTGCTGAGGCTTCTTTGACTATTGATGGGATATTTTACGTTATTGATCCTGGGTTTGCAAAGCAAAATGTTTATAACCCAAAACAAGGACTTGATTCATTGGTGATAACTCCGATATCACAAGCTTCAGCCAAACAAAGAGCAGGACGTGCAGGGCGTACTGGACCTGGAAAATGCTATCGCCTATATACTGAGAGCGCATATAGGAATGAGATGCCTCCCACCACGATTCCTGAGATTCAAAGGATAAATCTTGCAATGACTACTCTCAACATGAAAGCTATGGGAATAAATGATCTTCTGTCCTTTGATTTTATGGATCCACCATCATCCCAAGCTATTATTTCAGCCATGGAACAGCTCTATAGTCTTGGAGCATTGGATGAAGAGGGCCTTTTAACCAAATTGGGGAGGAAAATGGCAGAATTTCCCTTGGATCCACCATTGTCTAAGATGTTACTTGCCAGTGTGGACCTTGGATGTAGTGATGAGATATTGACGATAATTTCCATGATTCAGACTGGCAATATTTTTTACAGGCCTAGGGAAAAGCAAGCCCAAGCAGATCAGAAGAGGGCAAAGTTTTTCCAGCCTGAAGGTGACCATCTCACACTGCTTGCTGTTTATGAGGCTTGGAAAGCCAAGAATTTTTCGGGACCATGGTGTTTTGAGAACTTTGTTCAATCTCGATCATTGAGGAGAGCACAGGATGTCAGGAAACAGCTTCTCACCATCATGGATAAGTATAAATTGGATGTTGTAAGTGCTGGAAAAAACTTTACCAAGATCAGAAAGGCGATCACTGCAGGATTCTTTTTCCATGCAGCAAGGAAGGATCCCCAGGAAGGCTACAGAACCCTTGTTGAGAACCAGCCTGTATATATCCATCCAAGTTCATCTTTGTTCCAGAGACAACCTAGTTGGGTCATCTACCATGAACTTGTTATGACTACTAAGGAATATATGCGTGAGGTCATAGTGATAGATCCTAAATGGCTTGTTGAATTGGCCCCAAGATTCTTCAAAGTATCAGATCCTACAAAGATGAGCAAGCGAAAGCGTCAAGAGCGGATTGAACCACTCTATGACAGATATCAGGAGCCAAATTCATGGCGTTTGAGTAAACGCCGTGCTTGA | 3663 | 0.4406 | MAVESSQDLLKKLEYLSLVSKVCTEMESHTGNADKVLAEFITELGRSSENFEEFDAKLKENGAELPDYFVRTLLKIIHAILPPKKGSGNSDSKGSKLDGGGSKGKFKALAIADDRDRVKELQKEIEAEAKEEQGGDRDREINGEDGDRETDRGRRERIGRRDRYDKYDRDERYSDRDRNRNIDIDMDRDRDRDRDRDYDDERRDSRRRGRDREINSDSGRDNDKDRYERWRLNGYEDENDGYGKEDDGGGCGVERKGWREPIHGGGGEVELYKIYKGRVSRVMDTGCFVQLDDDRGKEGLVHVSQIATKRISNAKDVVKRDQEVYVKVISVSGHKLSLSMRDVDQHTGKDLPLKKSDEDTFRIQDLKDGAVARTGLSGIGIVEEDDMGKSRRPLKRMSSPERWEAKQLIASGVLSVSEYPTYDEEEDGLMYEEEGAEEELEIELNEDEPAFLQGQSRHKMDTSPVKIFKNPEGSLGRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPESGERHLAQELRGVGLSAYDMPEWKKDAYGKTITFGQRSKLSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQITQYLAEAGYTTRGKIGCTQPRRVAATSVAKRVAEEFGCQLGEEVGYAIRFEDSTGPDTVIKYMTEGMLLREILADENLSQYSVIMLDEAHERTINTDVLFGLLKQLVQCRPELRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYSKQPESDYLDAALITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMPPTTIPEIQRINLAMTTLNMKAMGINDLLSFDFMDPPSSQAIISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIISMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDKYKLDVVSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSSLFQRQPSWVIYHELVMTTKEYMREVIVIDPKWLVELAPRFFKVSDPTKMSKRKRQERIEPLYDRYQEPNSWRLSKRRA | 1220 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip06g00071 | 1220 | ProSiteProfiles | S1 domain profile. | 272 | 341 | IPR003029 | GO:0003676 | |
| Aip06g00071 | 1220 | Gene3D | - | 539 | 742 | IPR027417 | - | |
| Aip06g00071 | 1220 | PANTHER | ATP-DEPENDENT RNA HELICASE | 91 | 1220 | - | - | |
| Aip06g00071 | 1220 | SMART | ultradead3 | 565 | 749 | IPR014001 | - | |
| Aip06g00071 | 1220 | Coils | Coil | 111 | 131 | - | - | |
| Aip06g00071 | 1220 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 758 | 938 | IPR001650 | - | |
| Aip06g00071 | 1220 | CDD | DEXHc_DHX8 | 562 | 740 | IPR044762 | GO:0000398|GO:0003724|GO:0005524 | |
| Aip06g00071 | 1220 | ProSitePatterns | DEAH-box subfamily ATP-dependent helicases signature. | 682 | 691 | IPR002464 | - | |
| Aip06g00071 | 1220 | CDD | SF2_C_RHA | 744 | 905 | - | - | |
| Aip06g00071 | 1220 | Pfam | Helicase conserved C-terminal domain | 765 | 897 | IPR001650 | - | |
| Aip06g00071 | 1220 | Gene3D | - | 743 | 916 | IPR027417 | - | |
| Aip06g00071 | 1220 | Pfam | S1 RNA binding domain | 273 | 333 | IPR003029 | GO:0003676 | |
| Aip06g00071 | 1220 | SMART | S1_6 | 270 | 341 | IPR022967 | - | |
| Aip06g00071 | 1220 | MobiDBLite | consensus disorder prediction | 82 | 101 | - | - | |
| Aip06g00071 | 1220 | Pfam | DEAD/DEAH box helicase | 573 | 723 | IPR011545 | GO:0003676|GO:0005524 | |
| Aip06g00071 | 1220 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 577 | 740 | IPR014001 | - | |
| Aip06g00071 | 1220 | SMART | ha2_5 | 958 | 1048 | IPR007502 | GO:0004386 | |
| Aip06g00071 | 1220 | Gene3D | - | 266 | 352 | IPR012340 | - | |
| Aip06g00071 | 1220 | MobiDBLite | consensus disorder prediction | 127 | 155 | - | - | |
| Aip06g00071 | 1220 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 557 | 1090 | IPR027417 | - | |
| Aip06g00071 | 1220 | Gene3D | - | 942 | 1041 | - | - | |
| Aip06g00071 | 1220 | PANTHER | - | 91 | 1220 | - | - | |
| Aip06g00071 | 1220 | Coils | Coil | 478 | 498 | - | - | |
| Aip06g00071 | 1220 | Pfam | Helicase associated domain (HA2) | 959 | 1047 | IPR007502 | GO:0004386 | |
| Aip06g00071 | 1220 | CDD | S1_DHX8_helicase | 272 | 348 | - | - | |
| Aip06g00071 | 1220 | SUPERFAMILY | Nucleic acid-binding proteins | 271 | 347 | IPR012340 | - | |
| Aip06g00071 | 1220 | SMART | helicmild6 | 793 | 897 | IPR001650 | - | |
| Aip06g00071 | 1220 | Pfam | Oligonucleotide/oligosaccharide-binding (OB)-fold | 1105 | 1180 | IPR011709 | - | |
| Aip06g00071 | 1220 | MobiDBLite | consensus disorder prediction | 189 | 225 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aip06g00071 | Aip-Chr6 | 702611 | 707053 | Dispersed/Transposed |