Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g00062 ATGGGAGTTCCGGCGTTTTACCGGTGGCTGGCGGAGAAGTATCCGATGGTGGTTGTCGATGCCGTCGAGGAGGAACCGGTGGTGATCGACGGAATCGCGATTCCAGTGGATACGAGCAAGAAGAACCCTAACAACCTTGAATACGATAACCTCTACCTCGATATGAACGGCATCATTCACCCTTGTTTTCACCCCGAGGATAGGCCATCTCCGACTTCATTTGATGAGGTGTTCCAGTGCATGTTTGACTACATTGATAGGCTGTTTGTGATTGTCCGGCCTAGGAAGCTGCTCTACATGGCTATTGATGGTGTGGCACCGAGGGCTAAAATGAATCAGCAACGGTCTAGGCGGTTCAGAGCAGCAAAAGATGCAGCTGACGCAGCTGCTGAAGAAACTAGGTTAAGAGAGGAATTTGAGAGGGAGGGCAGAAAGCTTCCTCCCAAAGAAGAGTCCCAGACTTTTGATTCAAATGTCATTACACCTGGAACCGAATTTATGGCTGTTTTATCAATTGCGCTCCAGTACTATGTTCATCTTAGGTTAAACAATGACCCTGGTTGGCAGAATATTAAGGTTATTCTTTCAGATGCAAATGTTCCTGGTGAGGGGGAGCATAAGATTATGTCCTATATACGGTTACAGAGGAATCTTGAAGGTTATGATCCAAATACAAGACATTGCCTGTATGGTTTGGATGCTGATTTGATTATGTTGGCTTTAGCTACCCATGAAGTGCACTTTTCAATTCTAAGAGAGGTTGTATTTACTCCCGGTCAAGACAAATGTTTCCTGTGTGGTCAGATGGGTCACATGGCTGCTGACTGTGAAGGAAAGGCAAAAAGAAAGGCCGGAGAATTTGATGAAAAAGGAGATCCTATTGTGGTTAAAAAGCCTTACCAGTTTCTAAACATTTGGACATTGAGGGAATATCTGGAGTATGAGATGAAAATTCCGAATCCTTCATTTGAGATTGATTTTGAGCGAATTGTTGATGACTTTATCTTCATGTGCTTTTTTGTTGGCAATGATTTCCTTCCCCATATGCCTACACTAGAAATTAGAGAGGGTGCAATTAACTTGCTTCTAGCAGTATACAAGAAGGAGTTCAATGCACTAGGTGGTTATTTAACCAAAGGAAGTAAGCCAAATTTGGATAGAGTGGAGCACTTTATTCAGGCTGTTGGAGCTTATGAAGATAGAATTTTCCAGAAAAGAGCTCGATTGCATCAGCGACAAGCAGAAAGAATTAAGCGGGATAAGGCCCATTCAAGGAGGGGAGATGATGCCCAGCCTCAATTTCAACCAGAGTCTCTAGTTGCAGTTTCACGATTTCATGGTTCTCGTCTTGCTTCAGCTCCAACGCCTTCACCATTTCAACAATCTGGGCACCATGATCCCAGCTCATCTGGGAAAGACCATAGGAGTGCATCTGAGGCGCTCCCAAAAGTTGCTAAGCTATCTTCTGGGGCAACTGTTGCTGCTGCTATTGTTGAAGCTGAGAATAGTCTTGAAATAGATTTTCAAGATAACAAAGACGAATTGAAAGCAAAACTAAAGGAGGTACTTCGTGAGAAATCTGATGTATTCAATTCACAAAATGCCGGAGAGGATAAGATCAAATTGGGAGAACCAGGCTGGAAAGAGAGATATTATGATGAGAAGTTCTCGGCTAAAACTCCTGAGGAACTTGAAATGATACGGAAAGATGTTGTTTTGAAATACACTGAAGGCTTGTGTTGGGTGATGCACTATTATTACGAAGGTGTTTGTTCTTGGCAATGGTTTTATCCTTATCATTATGCCCCGTTTGCATCTGATCTCAAGGACCTTGGGAGTCTTGATATTAACTTTTCACTGGGTACCCCATTCAAACCTTTTGACCAACTTCTTGGGGTTTTCCCTGCTGCGAGCTCGCATGCACTTCCTCAACCATATAGGAAACTTATGACAGAAGCTGACTCACCAATCATTGATTTTTATCCAGTTGACTTTGAAGTGGACATGAATGGCAAACGCTATTCTTGGCAGGGTATTGCAAAGTTGCCTTTTATTGATGAAGCACGTCTTCTTGCAGAAGTTACAAAAGTTGAAAATTTGTTAACACCAGAGGAGAAGAGGCGAAATGCTATCATGTTTGACTTGCTTTTCGTAAATTCCTGTCATCCACTTTCTGCATGCATAAGTACACTTGACAACAAATGCAGAAACATGTCCGACAGTGAGCGTGTTGATGTCAAAGAACAAATCAATCCCAAAGAAAGGTATACGTGCAGTGGCGGAATGAATGGTTTTATATCCTTATGTGGTGGAGAGCCTTGCCCTCCTATCTTTAGGTCTCCTGTTGAAGGCATGGAAGATATTATGGACAACCATGTCATATGTGCCATATACAGACTCCCAGATGCGCATAAACACATTACTCGACCACCACCAGGAGTTAAATTTCCAAAGAAGACTGTGACTCTTGGGGATATGAAACCTGAACCAGTATTATGGCATGAAGATTCTGGTGGGAGACGGGGTGGTGGGGATAATGGGAGGAGAAACCCTCCAGGATCTATTTCTGGTCGGGAGCTTGGAGATGCAGCACACAGATTAGTAACGAATTCCTTACAAGCAAAAGGTGGCAACAATGGATATCGCTATCCAATTAATGGACCACCTCCATCTTACGCACCACCAATGGCTCACCAAAGATTGCCTCCCTACAATTATGAATCACACCCAGGATACGGTGCCATGCCACCTTCTGTGATGCCTCCACTCCAGGGCCAGCAGCCTTATCGACCTTATGCTACTGTCCCTACCCAACAGTATGGTTATAATCAGCCATATCAGCTGCCTCCCCCGGCAATGTACAATCATCATCATCAACCACCTGGTTCTTATGAAAGAAATAACCACCAACACCCCCCACGATCAAACCATTATGGAAGAAATCACGGTAGTGGGGGAAGTGGGAGGGATGGATACCAACCATCAGGTAATAATCACAATGCCAGGTATCCAAATGCGTCGCAAGGGGCATTTGGTAGTCATCATCAAGATGTTCGACATCATGGCCAAGGTTACCAACCATCTAGACATCACCAGAATTGGGCTCCAAGGAATGACGAAAATGGCCCCAGGGATTATGGGCACCAACATTCGGCCAATCAATTTTCTTTGGACAGAAGGGGAAACAGGAAGCCAATGCCACCACCTGGTTATAGTCGCAGATAA 3225 0.4409 MGVPAFYRWLAEKYPMVVVDAVEEEPVVIDGIAIPVDTSKKNPNNLEYDNLYLDMNGIIHPCFHPEDRPSPTSFDEVFQCMFDYIDRLFVIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEETRLREEFEREGRKLPPKEESQTFDSNVITPGTEFMAVLSIALQYYVHLRLNNDPGWQNIKVILSDANVPGEGEHKIMSYIRLQRNLEGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQDKCFLCGQMGHMAADCEGKAKRKAGEFDEKGDPIVVKKPYQFLNIWTLREYLEYEMKIPNPSFEIDFERIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLLAVYKKEFNALGGYLTKGSKPNLDRVEHFIQAVGAYEDRIFQKRARLHQRQAERIKRDKAHSRRGDDAQPQFQPESLVAVSRFHGSRLASAPTPSPFQQSGHHDPSSSGKDHRSASEALPKVAKLSSGATVAAAIVEAENSLEIDFQDNKDELKAKLKEVLREKSDVFNSQNAGEDKIKLGEPGWKERYYDEKFSAKTPEELEMIRKDVVLKYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGSLDINFSLGTPFKPFDQLLGVFPAASSHALPQPYRKLMTEADSPIIDFYPVDFEVDMNGKRYSWQGIAKLPFIDEARLLAEVTKVENLLTPEEKRRNAIMFDLLFVNSCHPLSACISTLDNKCRNMSDSERVDVKEQINPKERYTCSGGMNGFISLCGGEPCPPIFRSPVEGMEDIMDNHVICAIYRLPDAHKHITRPPPGVKFPKKTVTLGDMKPEPVLWHEDSGGRRGGGDNGRRNPPGSISGRELGDAAHRLVTNSLQAKGGNNGYRYPINGPPPSYAPPMAHQRLPPYNYESHPGYGAMPPSVMPPLQGQQPYRPYATVPTQQYGYNQPYQLPPPAMYNHHHQPPGSYERNNHQHPPRSNHYGRNHGSGGSGRDGYQPSGNNHNARYPNASQGAFGSHHQDVRHHGQGYQPSRHHQNWAPRNDENGPRDYGHQHSANQFSLDRRGNRKPMPPPGYSRR 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g00062 1074 MobiDBLite consensus disorder prediction 829 843 - -
Aip06g00062 1074 PANTHER 5'-3' EXORIBONUCLEASE 1 1034 - -
Aip06g00062 1074 Coils Coil 122 142 - -
Aip06g00062 1074 MobiDBLite consensus disorder prediction 809 860 - -
Aip06g00062 1074 SMART c2hcfinal6 262 278 IPR001878 GO:0003676|GO:0008270
Aip06g00062 1074 Gene3D - 601 711 - -
Aip06g00062 1074 CDD PIN_XRN1-2-like 51 312 - -
Aip06g00062 1074 MobiDBLite consensus disorder prediction 130 155 - -
Aip06g00062 1074 PIRSF Exonuclease_Xrn2 1 1042 IPR017151 GO:0004534|GO:0005634|GO:0006139
Aip06g00062 1074 Pfam Zinc knuckle 262 276 IPR001878 GO:0003676|GO:0008270
Aip06g00062 1074 SUPERFAMILY Retrovirus zinc finger-like domains 258 283 IPR036875 GO:0003676|GO:0008270
Aip06g00062 1074 Coils Coil 505 525 - -
Aip06g00062 1074 Pfam XRN 5'-3' exonuclease N-terminus 1 253 IPR004859 GO:0003676|GO:0004527
Aip06g00062 1074 PANTHER 5'->3' EXORIBONUCLEASE 1 1034 IPR027073 -
Aip06g00062 1074 MobiDBLite consensus disorder prediction 988 1012 - -
Aip06g00062 1074 MobiDBLite consensus disorder prediction 413 437 - -
Aip06g00062 1074 MobiDBLite consensus disorder prediction 449 483 - -
Aip06g00062 1074 MobiDBLite consensus disorder prediction 872 909 - -
Aip06g00062 1074 Gene3D - 1 134 - -
Aip06g00062 1074 Gene3D - 146 387 - -
Aip06g00062 1074 Pfam Xrn1 helical domain 325 826 IPR041412 -
Aip06g00062 1074 MobiDBLite consensus disorder prediction 130 151 - -
Aip06g00062 1074 MobiDBLite consensus disorder prediction 940 1074 - -
Aip06g00062 1074 MobiDBLite consensus disorder prediction 413 430 - -
Aip06g00062 1074 ProSiteProfiles Zinc finger CCHC-type profile. 262 276 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g00062 Aip-Chr6 550450 559370 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00062 06 550450 559370 Aip06g00062 06 550450 559370 ECH