Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip06g00027 | ATGGGGCAGTGCTTCACTAAATCCCAAAGTAATAACAGAATCCCAATCTCATATGAACCCGATTCGCCGCCGCCGCCGCCACAGCAGCGTCATCTTCCAAACAGAAGCAAACAACCGGGGCCTGCATACCGTCCAGCAAAATCAGAGGCGGCCTCGTCGTCATCCCATCAGGAGGGATCCATGATAGGGAAGGCTTTGACGGACATAAACGAATTGTACAGGCTGGAGAGGGAGCTGGGAAGGGGGCAGTTCGGCGTGACGTACCTGTGCACGGAGAAGGCGACGGGAAGACAATACGCGTGCAAGTCGATAGCGAGAAGAAAGGTGACGCGGAAGAACGAGATGGATGACGTGAAGAGGGAGATAATGATCCTTCAGCACCTGACGGGGCAGCCCAACATCGTGGAGTTCAAGGGAGCCTACGAGGACAGGCAGCACGTGCATTTGGTGATGGAGTTGTGCCGCGGCGGCGAACTCTTCGACAGGATCATAGCCAGGGGGAGTTACTCTGAGAGGGAGGCTGCTTCCATATGCAGGCAGATCGTCAATGTGGTTCATGTTTGCCACTTCATGGGTGTCATGCATAGGGATCTCAAGCCTGAGAATTTCTTGTTGGTTAGTAGGGATCAAAATGCTCCTTTGAAAGCCACTGATTTTGGTTTGTCTGTCTTCATTGAAGAAGATAAAGTGTACAAAGAAATAGTTGGAAGTGCATACTATGTGGCTCCGGAGGTGCTGAAACGCAATTATGGAAAGGAGATAGATGTGTGGAGTGCTGGAGTCATTCTATACATTCTCTTAAGCGGGGTGCCCCCATTTTGGGGTGAAAATGAGAAGCAGATCTTTGATGCTATCTTGGAAGGGAAATTAGATCTAGAAAGCGCACCATGGCCTTCTATTTCAGCTGCTGCAAAAGATTTGATCAGGAAAATGTTAGCCTATGAACCTAAGAAACGCATCACAGCTTCTGCTGCCCTTGAACACCCTTGGATGAAGGAAGGGGGGGAAGCATCTGACAAGCCTATAGACAATGCGGTTTTAAGTAGGATGAAACAATTCAGAGCAATGAACAAGATGAAGAAACTTGCTTTAAAGGTGATAGCACAAAACCTTTCAGAGGAAGAAATCAAGGGCCTGAAACAAATGTTCAACAATATGGATACGGATCGCAGCGGCACAATCACTTTCGAAGAACTAAAATCTGGTTTGTCCAGATTGGGATCCAAGCTTTCTGAAACTGAAATAAGGCAGCTAATGGATGCTGCTGATGTTGATAAGAGTGGAACCATTGACTATTATGAATTCATTACTGCCACCATGCATCGGCATAAACTTGAGAAGGAAGAAAATTTGTATAAGGCTTTTCAATACTTCGACAAGGATAGCAGCGGTTACATAACAAGAGATGAGCTTAGACATGCTTTGACTGAATATCAAATGGGAGATGAAGCAACTATTGATGAAGTCATTGATGACGTTGACACTGACAAGGATGGGAGGATCAACTACGAGGAGTTCGTGGCTATGATGAGGAAGGGGACATTGGATAATGAAGGGGTTATCGGCAAAGAGAGAACACGATAA | 1584 | 0.4665 | MGQCFTKSQSNNRIPISYEPDSPPPPPQQRHLPNRSKQPGPAYRPAKSEAASSSSHQEGSMIGKALTDINELYRLERELGRGQFGVTYLCTEKATGRQYACKSIARRKVTRKNEMDDVKREIMILQHLTGQPNIVEFKGAYEDRQHVHLVMELCRGGELFDRIIARGSYSEREAASICRQIVNVVHVCHFMGVMHRDLKPENFLLVSRDQNAPLKATDFGLSVFIEEDKVYKEIVGSAYYVAPEVLKRNYGKEIDVWSAGVILYILLSGVPPFWGENEKQIFDAILEGKLDLESAPWPSISAAAKDLIRKMLAYEPKKRITASAALEHPWMKEGGEASDKPIDNAVLSRMKQFRAMNKMKKLALKVIAQNLSEEEIKGLKQMFNNMDTDRSGTITFEELKSGLSRLGSKLSETEIRQLMDAADVDKSGTIDYYEFITATMHRHKLEKEENLYKAFQYFDKDSSGYITRDELRHALTEYQMGDEATIDEVIDDVDTDKDGRINYEEFVAMMRKGTLDNEGVIGKERTR | 527 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip06g00027 | 527 | PANTHER | CALCIUM-DEPENDENT PROTEIN KINASE 29 | 38 | 517 | - | - | |
| Aip06g00027 | 527 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
| Aip06g00027 | 527 | ProSitePatterns | Protein kinases ATP-binding region signature. | 79 | 102 | IPR017441 | GO:0005524 | |
| Aip06g00027 | 527 | SUPERFAMILY | EF-hand | 370 | 511 | IPR011992 | - | |
| Aip06g00027 | 527 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 481 | 516 | IPR002048 | GO:0005509 | |
| Aip06g00027 | 527 | ProSiteProfiles | Protein kinase domain profile. | 73 | 331 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Aip06g00027 | 527 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 38 | 517 | - | - | |
| Aip06g00027 | 527 | Gene3D | - | 339 | 515 | - | - | |
| Aip06g00027 | 527 | Pfam | EF-hand domain pair | 448 | 511 | IPR002048 | GO:0005509 | |
| Aip06g00027 | 527 | Pfam | EF-hand domain pair | 379 | 439 | IPR002048 | GO:0005509 | |
| Aip06g00027 | 527 | Pfam | Protein kinase domain | 73 | 331 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Aip06g00027 | 527 | SUPERFAMILY | Protein kinase-like (PK-like) | 73 | 338 | IPR011009 | - | |
| Aip06g00027 | 527 | MobiDBLite | consensus disorder prediction | 18 | 32 | - | - | |
| Aip06g00027 | 527 | ProSitePatterns | EF-hand calcium-binding domain. | 423 | 435 | IPR018247 | - | |
| Aip06g00027 | 527 | CDD | STKc_CAMK | 73 | 330 | - | - | |
| Aip06g00027 | 527 | MobiDBLite | consensus disorder prediction | 1 | 61 | - | - | |
| Aip06g00027 | 527 | Gene3D | Phosphorylase Kinase; domain 1 | 75 | 158 | - | - | |
| Aip06g00027 | 527 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 446 | 480 | IPR002048 | GO:0005509 | |
| Aip06g00027 | 527 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 193 | 205 | IPR008271 | GO:0004672|GO:0006468 | |
| Aip06g00027 | 527 | Gene3D | Transferase(Phosphotransferase) domain 1 | 159 | 338 | - | - | |
| Aip06g00027 | 527 | SMART | serkin_6 | 73 | 331 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Aip06g00027 | 527 | ProSitePatterns | EF-hand calcium-binding domain. | 494 | 506 | IPR018247 | - | |
| Aip06g00027 | 527 | ProSitePatterns | EF-hand calcium-binding domain. | 387 | 399 | IPR018247 | - | |
| Aip06g00027 | 527 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 410 | 445 | IPR002048 | GO:0005509 | |
| Aip06g00027 | 527 | SMART | efh_1 | 414 | 442 | IPR002048 | GO:0005509 | |
| Aip06g00027 | 527 | SMART | efh_1 | 450 | 478 | IPR002048 | GO:0005509 | |
| Aip06g00027 | 527 | SMART | efh_1 | 378 | 406 | IPR002048 | GO:0005509 | |
| Aip06g00027 | 527 | SMART | efh_1 | 485 | 513 | IPR002048 | GO:0005509 | |
| Aip06g00027 | 527 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 374 | 409 | IPR002048 | GO:0005509 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aip06g00027 | Aip-Chr6 | 211606 | 214813 | Dispersed/Transposed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | CAMK_CDPK | Aip06g00027 | Pkinase | 4.2e-76 | CL0016 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Aip06g00027 | 06 | 211606 | 214813 | Aip06g00027 | 06 | 211606 | 214813 | ECH |