Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02106 ATGGGTAGAGGGAAGGTGGAGCTGAAGAGGATTGAGAACAAGATAAACAGGCAAGTGACGTTTGCAAAGAGAAGAAACGGTTTGCTGAAGAAGGCTTATGAGCTTTCTATCCTCTGTGATGCCGAAGTTGCTCTCATTATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCTGCAGCACTTCTAGCATGGCGAAGACACTTGAACGGTACCAGAAATGCAGTTATGGAGCCTTGGAAGTAAATCACCAACCTGCTGTGGAGACACAGAGGCGCTATCAAGAGTATCTCAAGCTGAAATCAAAAGTTGAGGCACTACAGAAGACTCAAAGTAGAAATCTCCTTGGGGAAGAATTGGATAACTTAGATGTTAACGAGCTTGAACGGCTTGAGCGTCAGCTGGACTCTTCATTGAAGCAAATTAGGTCTAACAAGACACAACTTTTGCTCGACCAACTCTCGGATTTGCAAAGAAAGGAAGAGATGCTGTTGGAAACAAATAATGTCCTCCGGAGCAAGTTGGAGGAAATTAATATGGCGATTCAACCAACATGGGAAGCTAGGGAGCAAAATGCTCCCTACAGCCGACACCCTCAGCAATCAGAGGGATACTATGAGACAACACAATGCAATAGCACATTACAAATTGGATACGGTTCTTCGGTGACAAATGATGCAGTAGGTGGTGCAGGAACATCAACCCAAAATGCTAGTGAATTCTTGCATGGATGGATGGAAGTATAA 741 0.444 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSNRGKLYEFCSTSSMAKTLERYQKCSYGALEVNHQPAVETQRRYQEYLKLKSKVEALQKTQSRNLLGEELDNLDVNELERLERQLDSSLKQIRSNKTQLLLDQLSDLQRKEEMLLETNNVLRSKLEEINMAIQPTWEAREQNAPYSRHPQQSEGYYETTQCNSTLQIGYGSSVTNDAVGGAGTSTQNASEFLHGWMEV 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02106 246 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 1 228 - -
Aip05g02106 246 Pfam K-box region 87 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aip05g02106 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aip05g02106 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aip05g02106 246 Coils Coil 123 146 - -
Aip05g02106 246 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Aip05g02106 246 PANTHER MADS BOX PROTEIN 1 228 - -
Aip05g02106 246 ProSiteProfiles K-box domain profile. 88 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aip05g02106 246 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Aip05g02106 246 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Aip05g02106 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aip05g02106 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aip05g02106 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aip05g02106 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aip05g02106 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02106 Aip-Chr5 84992134 85013108 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aip05g02106 K-box 1.1e-23 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g02106 05 84992134 85013108 Aip05g02106 05 84992134 85013108 ECH
Aip05g02106 05 84992134 85013108 Aip04g03472 04 129166928 129172244 ECH