Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00707 ATGCCCTCCTCCGACTCCGGCGAAAGCCGTCGATCAGCCAAGCCTCACAACACTTCCCTAGCCCCACCGCCGGCCGAGCAAGAGCACCTGCCATGCCCTCCCTGCGACTCTACTAATACCAAGTTCTGCTACTACAACAACTACAACTTCTCCCAGCCTCGCCACTTCTGCAAGTCCTGCCGCCGCTACTGGACCCACGGCGGCACTCTCCGTGACATCCCCGTCGGCGGTGGAAGCCGTAAAAACGCCAAGCGCTCTCGCACCGTTCCTTCAGCCTCCACCGCCACAACCTCCTCCTCCGGAGGTGCGGCCGTCACCTCGGTTTCTTCTGTGACCCCGCTCACCATGGTTCCCGTGGCCGGGAACAACCACCCCGGAGCACCCGTGCAGTTCGGTGGAGTAGTTGTGGATGGTGAAGCAAAGGGTAATAACGTGAGCTTGTGCGGTGGGAGCTTCACTTCGTTGCTGAGCAACACACAGCAGGGTCCTGGTGGGTTTCTGGCTCTGGGTGGGTTTGGGCTTGGTCTTGGGCCTGGCCTCGAAGATGTTGGATTTGGGATGGGGATGGGGAGAGGCGGTTGGGCTTTCCCGGGCGTGGTGGCGGACGGAGGCAGCATTGGCGGCGGTGTTGCGGGATCCGGTGTTGGGCACACGTGGCAGTTTGAAGGCGGCGATCAAGGTGGCTTTGTTTCTGGAGACTGCTTCCCTTGGCCGGGACTAGCCATTTCCACACCCGGAAATGGTCTCAAATAA 753 0.6096 MPSSDSGESRRSAKPHNTSLAPPPAEQEHLPCPPCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRSRTVPSASTATTSSSGGAAVTSVSSVTPLTMVPVAGNNHPGAPVQFGGVVVDGEAKGNNVSLCGGSFTSLLSNTQQGPGGFLALGGFGLGLGPGLEDVGFGMGMGRGGWAFPGVVADGGSIGGGVAGSGVGHTWQFEGGDQGGFVSGDCFPWPGLAISTPGNGLK 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00707 250 MobiDBLite consensus disorder prediction 84 105 - -
Aip05g00707 250 MobiDBLite consensus disorder prediction 71 105 - -
Aip05g00707 250 ProSitePatterns Zinc finger Dof-type signature. 32 68 IPR003851 GO:0003677|GO:0006355
Aip05g00707 250 PANTHER DOF ZINC FINGER PROTEIN DOF3.4 1 247 - -
Aip05g00707 250 Pfam Dof domain, zinc finger 28 84 IPR003851 GO:0003677|GO:0006355
Aip05g00707 250 MobiDBLite consensus disorder prediction 1 16 - -
Aip05g00707 250 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 247 IPR045174 GO:0003700|GO:0006355
Aip05g00707 250 ProSiteProfiles Zinc finger Dof-type profile. 30 84 IPR003851 GO:0003677|GO:0006355
Aip05g00707 250 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00707 Aip-Chr5 8956721 8958095 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00707 1 250 C2C2-Dof Transcription Factor Family AT3G50410 52.273 2.38e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aip05g00707 zf-Dof 5.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00707 - - aip:107620759 353.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00707 05 8956721 8958095 Aip05g00707 05 8956721 8958095 ECH