Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00398 ATGGCTCTGTTCTCATACCACCGACATTCTTCTCAGCCCTTCTTCACTTTCTTCCTTTTCCTCCTCCTCGAAGGGGTTTCAGGTGCAACATTCACGTTCGTAAACAAGTGCGATCACACAGTATGGCCAGGCATATTGGGCAAACCAGATATCGGAAGCACGGGTTTCGAGCTCTCAAAGGGTTCCACAAAGACTTTCCAAGCTCCTACGGGCTGGTCGGGCAGATTCTGGGGCAGAACCGACTGCAAATTCGACGATCAAGGCAAAGGAACATGCGCCACCGCCGACTGCGGCTCCGGCGAGATCAACTGCAACGGAGGCGGAGCCTCTCCTCCGGCCACCCTCGCCGAGTTCACTCTCGGCACCGGTTCCATGGACTACTACGACGTCAGCCTCGTCGACGGCTACAATCTCCCCATGATGCGGTGCCCGTCGGAGCTTCGAGTGGAGGGCGGTGACGCGTGCCGCAGCGCGTGTGATGCATTCAAGAAACCGGAGTATTGCTGCGACGGAGAATTCGGAAACCCTAACACGTGTAAGCCATCTGTGTACTCTGAAATGTTCAAGAGTGCATGCCCCAAATCTTATAGCTATGCTTATGATGATGCCACCAGCACTTTCACTTGCTCCGATGCTGATTACACCGTCACTTTTTGTCCCTCTTCTCCGAGTCTAAAATCTTCGACGGATTCATCCCCTAAGGCAGCGGCTTCAGATTCGGGTTCGGATTTAGGGTCGGGGTCAGGTTCGTCGGTGGAGCAGTCGGCACTAGGTTCCACATCATGGCTAGCTGATATGGCTACGGCCACCGGGTCGGCATCCACAAGAAGCAAGCCTTTTCGGGGATCAATTTTGGTGGCGGTTGCTTTCTTTCTTTCTCTTTTGATAGCTTAG 894 0.5391 MALFSYHRHSSQPFFTFFLFLLLEGVSGATFTFVNKCDHTVWPGILGKPDIGSTGFELSKGSTKTFQAPTGWSGRFWGRTDCKFDDQGKGTCATADCGSGEINCNGGGASPPATLAEFTLGTGSMDYYDVSLVDGYNLPMMRCPSELRVEGGDACRSACDAFKKPEYCCDGEFGNPNTCKPSVYSEMFKSACPKSYSYAYDDATSTFTCSDADYTVTFCPSSPSLKSSTDSSPKAAASDSGSDLGSGSGSSVEQSALGSTSWLADMATATGSASTRSKPFRGSILVAVAFFLSLLIA 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00398 297 Pfam Thaumatin family 142 220 IPR001938 -
Aip05g00398 297 Pfam Thaumatin family 35 140 IPR001938 -
Aip05g00398 297 Gene3D Thaumatin 142 220 IPR037176 -
Aip05g00398 297 Gene3D Thaumatin 29 141 IPR037176 -
Aip05g00398 297 PANTHER PATHOGENESIS-RELATED THAUMATIN FAMILY PROTEIN 7 141 - -
Aip05g00398 297 PANTHER PATHOGENESIS-RELATED THAUMATIN FAMILY PROTEIN 142 245 - -
Aip05g00398 297 CDD TLP-PA 30 219 - -
Aip05g00398 297 PRINTS Pathogenesis-related protein signature 88 117 IPR001938 -
Aip05g00398 297 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Aip05g00398 297 PRINTS Pathogenesis-related protein signature 54 63 IPR001938 -
Aip05g00398 297 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Aip05g00398 297 PRINTS Pathogenesis-related protein signature 30 42 IPR001938 -
Aip05g00398 297 PRINTS Pathogenesis-related protein signature 210 219 IPR001938 -
Aip05g00398 297 PANTHER OS03G0233200 PROTEIN 142 245 IPR001938 -
Aip05g00398 297 ProSitePatterns Thaumatin family signature. 88 104 IPR017949 -
Aip05g00398 297 SMART tha2 31 220 IPR001938 -
Aip05g00398 297 SUPERFAMILY Osmotin, thaumatin-like protein 29 221 IPR037176 -
Aip05g00398 297 ProSiteProfiles Thaumatin family profile. 28 220 IPR001938 -
Aip05g00398 297 PANTHER OS03G0233200 PROTEIN 7 141 IPR001938 -
Aip05g00398 297 MobiDBLite consensus disorder prediction 223 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00398 Aip-Chr5 4442141 4443550 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00398 05 4442141 4443550 Aip05g00398 05 4442141 4443550 ECH
Aip05g00398 05 4442141 4443550 Aip07g02411 07 101584730 101588056 ECH