Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03836 ATGTCTTCAGTGGATAAAGAGCCCAGAGTCACAAGCCAATGCCACCGTCTTCCTGGCCAAGTTCTACGGCCGCGCCGGCCTCATGAACCTCCCATTTTTCGGTCCTTGCTGTACGAGGCATGCGGGAGGATAGTCAACCCAATCTACGGTTCCGTGGGCCTATTGTGGTCGGGCAGCTGGCAGCTCTGCCAGGCGGCAGTTGAAGCCGTCTTGAAAGGCGCGCCAATCACTCCCATCACCTCCGAAGCTGCCGCCAACGGCCGGGGCCCACCACTCAAAGCATACGACATACGCCACGTCACCAAGGACGACTCTAACTCCGCCCTCTCCACTCACAACCCCAGCCACCCACTCAAGACTCGCTCACGCAAGCGATCACACTCCCAGCCCAAGCCCAAGACCAAGCCCAACGCCCAGAAATTAACGACCACCGCCACTACAACTACCACCGCGTTGCTGAACGTTGACGAGGTCGTCAACCATTCCGCCAGTCTGGATCACGAGTCGTCGCTGAGTCACCAGTCCGAGTTGGTCACCGCCGCGGAAGGAGGAGGAGAGAGCAAAGAGAGAGAGAGTGAGAGCATCGTGTCGGTCGAGACTACCGCCGAGGCTGCTTCGGTTCTTTTCCGTGACGAGCCGGAGTCCAACCGGAAGCGCGTTGAGCGAACCGATGAGGACCGAAGCGGGCTTGGTCTAGACCTTACGCTTGGGTTCGAACCGGTTTCTTCTTCGGCACGTGCGGATCAGGTGGTTCCCGTTAAGAAGAGGAGGTTCGATTTGAAGGATTATGGTGAGATGGGGCTTGGGCTTGAATGCCCGGCTTGA 825 0.5867 MSSVDKEPRVTSQCHRLPGQVLRPRRPHEPPIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPITSEAAANGRGPPLKAYDIRHVTKDDSNSALSTHNPSHPLKTRSRKRSHSQPKPKTKPNAQKLTTTATTTTTALLNVDEVVNHSASLDHESSLSHQSELVTAAEGGGESKERESESIVSVETTAEAASVLFRDEPESNRKRVERTDEDRSGLGLDLTLGFEPVSSSARADQVVPVKKRRFDLKDYGEMGLGLECPA 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03836 274 MobiDBLite consensus disorder prediction 117 131 - -
Aip04g03836 274 MobiDBLite consensus disorder prediction 212 235 - -
Aip04g03836 274 MobiDBLite consensus disorder prediction 103 144 - -
Aip04g03836 274 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 28 255 - -
Aip04g03836 274 MobiDBLite consensus disorder prediction 165 199 - -
Aip04g03836 274 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 28 255 - -
Aip04g03836 274 Pfam Lateral organ boundaries (LOB) domain 30 70 IPR004883 -
Aip04g03836 274 MobiDBLite consensus disorder prediction 212 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03836 Aip-Chr4 132592230 132593395 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03836 30 260 AS2 family AT3G02550 48.707 5.76e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aip04g03836 LOB 4.9e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g03836 04 132592230 132593395 Aip04g03836 04 132592230 132593395 ECH
Aip09g03637 09 143179521 143180879 Aip04g03836 04 132592230 132593395 ECH