Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03797 ATGAAACCTCTTTGTCGTCTTCGCCACCTATATTCCATATGGATGTTCATCTTAGCTCTTATTGTCCTGGCAACCCACGTTCCAACATCTGTAGGTGCCGCTGATAACGTTTATTACTTGGCGTGCAAGAACACTTTAAGCTGCGGATCCATCAGCCAACTCACTTACCCTTTCTGGGGTGAAATTGACAACACTAATGACAGGCCAAACTATTGCGGTGAGCCTAACTTGGAGATCACATGTGAAGATAACAACCATAATAATGGAGTCCCAAAGTTCACAGTGGATTCTGTCAAATACAGGATTCTTGATTGGGACGTCGGTAAACAGAATCTGACAGTTGCTAGGGACGATTACTTTAGTACTAGCATTGATTTCTGTTCAGGAGATTTCAGCAACAACACCTTGAATGAAACCATACTTCAATATGATGATAACAGTGTTGTCAATATCACAATCTTATACAAGTGTTCTTCAGAAACAAAGCCTTCAGATCAGTTTAAGATTGTTCAGAGTTGCGGCAGCAGTAGTGTCTACTATGCTGAACAAGATGATAATAAGGCGCTGCCTTATTATGAAGGTTGCAGCACTGTTATTTTTCCTGTTTCAAAGGCCCTAGCTTCGGCTTTTGCTAACAGTGCCAATAACCCCACTAGAATTCAGCAAGCGTTGCAAGGTGGTTTTGTCTTGAAATTATTGCCTCAAATCAATGATCAGTGCAGAGGATGCACTAACTCAGGTGGCAATTGTGGCAGCAATGATGGACATTTCGTCTGTTACTGTAATGATGGAACTCATTCAAATTCTTGTTCAGGTAAGTTTCATTGTCTTTCAGGTGCTACCTCAGGAGCTGTAGTCTTTGTTGTCCTTCTTATAGGTACACTTTTTGTGATAAGAAGAAGGAGAAGAAATGCTGAAAGATCAAGAAGCAACAAGGATATTTTGCCTTTGAGTGGAGTCCCTCTTACATCTTCAACTACAAGTAGTAGTAACACATCTCAGAGTGTTTCTTCTTACCCTTCCTCCAAGTCAGATTCTGTGCCAAAGAGTTACTACTATGGTGTTCAAGTGTTTGACTATGCTGAACTTGAAGAAGCTACCAACAATTTTGACCCTTCTAGAGAACTTGGCGAGGGAGGCTTTGGCACTGTTTACAAAGGTATGCTTCAAGATGGGCGTGTAGTTGCAGTGAAACGCCACTATGAAAGCCATTTAAAGCGTGTTGAGCAGTATATGAATGAAGTTGAGCTTCTAGCACACTTGAGGCACAAGAATTTGGTCACACTCTTTGGCTGCACTTCAAGACACAGCAGAGAACTCATCCTTGTTTATGAGTTCATACCTAATGGAACACTAGCCGATCACCTCCATGGAAGCCTTGCAAATTCCACCTTACTTACTTGGAATGTAAGATACAAAGTTGCACTCGAAACAGCCGAGGCGCTTTCCTACCTTCATTCTAAGAAAGTCATACACAGAGATGTTAAGTCCACAAACATTCTGCTGACAGAGACTTTTCAAGTTAAGGTTGGTGATTTTGGACTATCAAGGTTGTTTCCTAAATTTGTTACTCATGTCTCAACAGCGCCACAAGGCACACCTGGCTATGTTGATCCGGAGTATTACCAGAACTACCAATTGACCGATAAGAGTGATGTTTATAGCTTTGGGGTGGTGTTAGTTGAGCTTATATCTTCACTGCAAGCAGTGGACATAACCCGGAACCGGAATGAAGTTAACTTGGCTAGTCTTGCAGTGAATAGGATACAGAACCAAGAATTGCATGACATGGTTGATCCATGTCTTGGATTTGAGAAGGACAATGATGTAAGGAGGATGGTAACTGCTGTTGCTGAATTGGCATTTAGGTGCTTGCAGCAGCAGAGAGATATGAGGCCCTCCATGGATGAGGTTCTTGAGATCTTGAGAGGGAGGAGGTTATACTTTTGA 1950 0.42 MKPLCRLRHLYSIWMFILALIVLATHVPTSVGAADNVYYLACKNTLSCGSISQLTYPFWGEIDNTNDRPNYCGEPNLEITCEDNNHNNGVPKFTVDSVKYRILDWDVGKQNLTVARDDYFSTSIDFCSGDFSNNTLNETILQYDDNSVVNITILYKCSSETKPSDQFKIVQSCGSSSVYYAEQDDNKALPYYEGCSTVIFPVSKALASAFANSANNPTRIQQALQGGFVLKLLPQINDQCRGCTNSGGNCGSNDGHFVCYCNDGTHSNSCSGKFHCLSGATSGAVVFVVLLIGTLFVIRRRRRNAERSRSNKDILPLSGVPLTSSTTSSSNTSQSVSSYPSSKSDSVPKSYYYGVQVFDYAELEEATNNFDPSRELGEGGFGTVYKGMLQDGRVVAVKRHYESHLKRVEQYMNEVELLAHLRHKNLVTLFGCTSRHSRELILVYEFIPNGTLADHLHGSLANSTLLTWNVRYKVALETAEALSYLHSKKVIHRDVKSTNILLTETFQVKVGDFGLSRLFPKFVTHVSTAPQGTPGYVDPEYYQNYQLTDKSDVYSFGVVLVELISSLQAVDITRNRNEVNLASLAVNRIQNQELHDMVDPCLGFEKDNDVRRMVTAVAELAFRCLQQQRDMRPSMDEVLEILRGRRLYF 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03797 649 ProSitePatterns Serine/Threonine protein kinases active-site signature. 490 502 IPR008271 GO:0004672|GO:0006468
Aip04g03797 649 MobiDBLite consensus disorder prediction 321 347 - -
Aip04g03797 649 Gene3D Phosphorylase Kinase; domain 1 341 446 - -
Aip04g03797 649 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 14 644 IPR044652 -
Aip04g03797 649 SMART serkin_6 370 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03797 649 SUPERFAMILY Protein kinase-like (PK-like) 343 642 IPR011009 -
Aip04g03797 649 ProSitePatterns Protein kinases ATP-binding region signature. 376 398 IPR017441 GO:0005524
Aip04g03797 649 Pfam Wall-associated receptor kinase C-terminal 176 264 IPR032872 -
Aip04g03797 649 PANTHER - 14 644 - -
Aip04g03797 649 Pfam Protein kinase domain 373 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03797 649 Pfam Wall-associated receptor kinase galacturonan-binding 42 115 IPR025287 GO:0030247
Aip04g03797 649 Gene3D Transferase(Phosphotransferase) domain 1 447 647 - -
Aip04g03797 649 ProSiteProfiles Protein kinase domain profile. 370 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03797 Aip-Chr4 132235998 132243397 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03797 41 644 Receptor kinase-like Gene Family AT1G25390 41.244 8.57e-139 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Aip04g03797 Pkinase 5.9e-49 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g03797 04 132235998 132243397 Aip04g03797 04 132235998 132243397 ECH
Aip09g03676 09 143608699 143624632 Aip04g03797 04 132235998 132243397 ECH