Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03472 ATGGGAAGGGGAAGAGTTGAGTTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTCACATTTGCAAAGAGAAGGAATGGTCTTCTCAAGAAAGCTTATGAGTTATCTGTTCTTTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACAGAGGAAAACTCTATGAGTTTTGTAGCAGCTCTAGCATGCTCAAAACACTCGAGAGGTATCAGAAGTGCAGTTATGGTGCTGTGGAAGTTAGCAAGCCTGCCAAAGAACTTGAGAATAGCTATCGTGAGTACTTGAAGCTGAAAGCAAGATTTGAATCTCTTCAAAGGACTCAAAGAAATCTTCTAGGGGAAGATTTGGGTCCATTGGGTACCAAAGATCTTGAGCAACTTGAAAGGCAATTGGATTCTTCTCTGAAGCAAGTGAGATCCACAAAGACACAATTTATGCTGGATCAATTAACTGATCTTCAAAATAAGGAGCAGATCTTGGTAGATGTCAACAGAACCTTGAGCATGAAGCTGGATGAAATCAATTCAAGGAATCAATATAGGCAGCAATCATGGGAAGCTGGTGATCAAAGTATGCATCAATATGCTGCTCCACATAATGCTCACTCTTCTCAAGGCTTCTTCCAACCTCTGGAATGCAACCCCACTTTGCAGATTGGCAGTGACTATAGGTACAATGGGGTAGGGTCAGATCAGATAACTGCTACAACAACTCAAGCTCAACAAGTGAGTGGTTTTATCCCTGGATGGATGCTTTGA 759 0.4203 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSYGAVEVSKPAKELENSYREYLKLKARFESLQRTQRNLLGEDLGPLGTKDLEQLERQLDSSLKQVRSTKTQFMLDQLTDLQNKEQILVDVNRTLSMKLDEINSRNQYRQQSWEAGDQSMHQYAAPHNAHSSQGFFQPLECNPTLQIGSDYRYNGVGSDQITATTTQAQQVSGFIPGWML 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03472 252 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Aip04g03472 252 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aip04g03472 252 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aip04g03472 252 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aip04g03472 252 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aip04g03472 252 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Aip04g03472 252 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 238 - -
Aip04g03472 252 Coils Coil 84 107 - -
Aip04g03472 252 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 238 - -
Aip04g03472 252 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aip04g03472 252 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Aip04g03472 252 Coils Coil 124 144 - -
Aip04g03472 252 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Aip04g03472 252 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aip04g03472 252 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aip04g03472 252 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03472 Aip-Chr4 129166928 129172244 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aip04g03472 K-box 1.9e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g03472 04 129166928 129172244 Aip01g02253 01 119171723 119178816 ECH
Aip04g03472 04 129166928 129172244 Aip10g02826 10 120943113 120955561 ECH
Aip04g03472 04 129166928 129172244 Aip04g03472 04 129166928 129172244 ECH
Aip05g02106 05 84992134 85013108 Aip04g03472 04 129166928 129172244 ECH
Aip10g03162 10 129299704 129304066 Aip04g03472 04 129166928 129172244 PCT