Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03293 ATGTCGGAAGTTGCAAAGGACCCTGCGATCAAGCTCTTCGGGAAGACGATCCCGGTGCCGGAGATTCCTACCGGATCCGGCGACCTCACCGGAGCTCCGGAACTCTCGTCCGTTGATGACAGTGTTGATCAGAATAACGCCTCTTCCACGAACTCTACCAGCAGCAGCGATGCACATGAGCTAGAAGAAATTGATAACAAGGATACTTTGGTAAATAAACCGGATGAAAAGAAGGAAGAAGTAGTGCCCCTGCAATCATCAGAAATTGTCAATCCGGATACAACGTCTGCGGCAGGTGAAGAATCTGTTAGTCCGTCCACTGAGAAAGAAGCGATGCCCTTGAAAACTTCCAAGACTGAAGAAGAACAGTCTGAGACAAGTAATTCACAAGATAAGACCCTCAAAAAGCCAGACAAAATTCTGCCGTGCCCCCGCTGTAATAGCATGGACACCAAGTTCTGTTACTACAACAACTATAACGTCAACCAACCCCGCCACTTCTGCAAGAACTGTCAGAGATATTGGACTGCTGGCGGAACCATGAGGAACGTGCCTGTAGGTGCCGGTCGCAGAAAGAACAAGAACTCTGCTGTTCATTATCGTCAGATAAATGGCCCCGAAGGAGCAATGCAAAATAATAGGAAAGACTTGCCAAATGGGGTCCATCATCCTCCTTTGATGTGCAACGGCACGGTCCTTACATTTGGGTCTGATGCACCCTTGTGCGAATCAATGGCATCTGTTTTGAACCTTTCTGAAAAAACTGCACACAATTACATGAGGAATGGATTTGCTAAGCCTGAAGAGCTAAGAATTCGGGTTCCCGGTGCGGGTGGAGAAAAAGGAGACGATCAATCCAATAAATCGTCGGTTAGCTCTGCAAAACCGATGGGAGGTACAACCAATAGTAATTCCCAAGAACAATCCATTCAGAATGGTCATAGCTTCACACCACAAATTCCCTACTTTCCCGGTCCCCCTTGGACTTTCCCTTGGAATCCGGCTCAGTGGAACTCTTCGGTACCACCACCTGCTTTTTGCCCACCGGGATTTGCCATGCCTTTCTATCCTGCAACGGCTTATTGGGGTGTCTCAGGTGCATGGAACATGCCGTGGCTAGCACAACCATCATCGCCAAATGCTGCAGCCACAAACTCTGGGCCTAACTCCCCAACCTTGGGCAAACATTCAAGAGAAGAAAACATGTTTAAATCAAATGAGCCGGGTGGTGAGAATGAGGACAAACAAAGCAAAGAGAATCACAAAGAAAAGTGCCTTTGGGTTCCAAAAACACTAAGAATTGATGATCCAGAAGAAGCAGCAAAAAGTTCTATATGGACTACACTCGGAATCAAACATGATAAGGATGACTCTGTTCTTGGGGAAGGACTCTTCAAACCATTCCCTTCAAAGTACCACGAAAAGAGTCATCCGATGCAAGCCTCGCCTGTCTTGCAGGCCAATCCGGCAGCATTGTCTAGGTCACTAAACTTTCGCGAGACTTCATAA 1509 0.4732 MSEVAKDPAIKLFGKTIPVPEIPTGSGDLTGAPELSSVDDSVDQNNASSTNSTSSSDAHELEEIDNKDTLVNKPDEKKEEVVPLQSSEIVNPDTTSAAGEESVSPSTEKEAMPLKTSKTEEEQSETSNSQDKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSAVHYRQINGPEGAMQNNRKDLPNGVHHPPLMCNGTVLTFGSDAPLCESMASVLNLSEKTAHNYMRNGFAKPEELRIRVPGAGGEKGDDQSNKSSVSSAKPMGGTTNSNSQEQSIQNGHSFTPQIPYFPGPPWTFPWNPAQWNSSVPPPAFCPPGFAMPFYPATAYWGVSGAWNMPWLAQPSSPNAAATNSGPNSPTLGKHSREENMFKSNEPGGENEDKQSKENHKEKCLWVPKTLRIDDPEEAAKSSIWTTLGIKHDKDDSVLGEGLFKPFPSKYHEKSHPMQASPVLQANPAALSRSLNFRETS 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03293 502 Pfam Dof domain, zinc finger 138 195 IPR003851 GO:0003677|GO:0006355
Aip04g03293 502 MobiDBLite consensus disorder prediction 87 103 - -
Aip04g03293 502 ProSiteProfiles Zinc finger Dof-type profile. 141 195 IPR003851 GO:0003677|GO:0006355
Aip04g03293 502 MobiDBLite consensus disorder prediction 1 139 - -
Aip04g03293 502 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 501 - -
Aip04g03293 502 MobiDBLite consensus disorder prediction 58 83 - -
Aip04g03293 502 MobiDBLite consensus disorder prediction 378 424 - -
Aip04g03293 502 PANTHER CYCLIC DOF FACTOR 2 1 501 IPR045174 GO:0003700|GO:0006355
Aip04g03293 502 MobiDBLite consensus disorder prediction 37 57 - -
Aip04g03293 502 MobiDBLite consensus disorder prediction 283 318 - -
Aip04g03293 502 MobiDBLite consensus disorder prediction 378 396 - -
Aip04g03293 502 ProSitePatterns Zinc finger Dof-type signature. 143 179 IPR003851 GO:0003677|GO:0006355
Aip04g03293 502 MobiDBLite consensus disorder prediction 274 318 - -
Aip04g03293 502 MobiDBLite consensus disorder prediction 113 139 - -
Aip04g03293 502 MobiDBLite consensus disorder prediction 397 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03293 Aip-Chr4 127331432 127334804 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03293 7 502 C2C2-Dof Transcription Factor Family AT5G39660 44.231 1.65e-114 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aip04g03293 zf-Dof 3.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03293 - - aprc:113862693 738.413