Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04836 ATGGAGAACAACAACAACAAAAGAAACCCACTTCCCCATTTTCCACGTCTTACTCTTACTACTATTACACTCATGATCTTCCTTGTTACGATGATGTTTCCTGTGACTGAAGAAGCTGCAGCACCAGTTTCTTCTTCCATCAAGACCGATGAACAGGCCCTTCTCATGTTCAAAAAGATGGTTCAAAAAGATGAAACTGGAGCTTTGTCAGGTTGGCAGCTCAACAGGAATCCATGCACCTGGTTTGGAGTTTCATGCACTCATGGAAGAGTCACTCAGCTTGATCTCAGTGGCCATGGTTTATCCGGAACCATCACTCTTGACCCTCTATCTTCTCTAGACATGTTGTCTGTTCTGAAACTTTCTCTCAATTCATTCTCTGTAAATTCCACTTCCTTGCTTACCCTCCCTTACAGTTTGACACAGCTTGATCTCTCTTTTGCCGGAGTTTCAGGTCCAATCCCTGACAACTTCTTCTCAAGGTGTCCAAATCTTGTTGTTGTGAACCTCTCTTACAACAACATGACTGGCCCTATCCCTGATAATTTCTTGCAAAATTCTGATAAGTTGCAGTCTCTTGATCTCTCTTCCAACAATTTATCAGGCTCAATATCTGGCCTCAAAATTGATTGCAACTCCTTGTTGCAGCTTGATCTATCTGAGAACCGTTTATCAGATTCAATTCCAATCTCTCTGTCAAACTGCACCAGCCTCAAGAGTTTGAACTTGGGGAACAATTTGATTTCTGGTGAGATTCCAAAGGCTTTGGGGAATCTGAACAGCCTACAGACTTTGGATCTTTCAAGGAATCAACTCATTGGTTGGATCCCTTTTGAGTTTGGAAATGTGTGTGCTTCCCTTGTCGAACTTAGGCTCTCTTTCAACAACCTTACAGGTTCAATACCATCAAGTTTCTCTTCTTGCACTTGGCTGCAGCTTCTTGATATATCCAACAACAACATGTCAGGTCCATTGCCAGATTCAATCTTTCATAACCTCGGATCATTGCAGGAATTAAGGCTGGGAAACAATGCAATCTCAGGGCCATTCCCATCTTCAATATCTTCCTGCAAGAAACTGAGGATTGTGGATTTTAGCTCAAACAAATTCTATGGATCTATCCCCAGAGATATATGTCCAGGTGCAGCATCACTTGAGGAGCTGAGAATGCCAGATAATCTCATAACTGGGGAAATTCCATCTCAACTGTCAAAATGCTCACAGTTAAAGACACTTGATTTTAGTCTCAACTATCTCAATGGTTCAATCCCTGAGGAGCTTGGACAGCTTGAGAATCTTGAGCAGCTGATAGCATGGTTCAATGGCTTGGAAGGTAAGATTCCACCAAAGTTGGGGAAATGCAAGAAGCTCAAGGATCTTATACTGAACAATAATCACTTAACTGGTGAAATTCCCAGTGAGTTGTTCAACTGCAGCAACCTTGAATGGATATCACTCACAAGCAATGAGCTCAGCGGCGAGATACCGCGCGAGTTTGGCCTATTGACAAGGCTGGCTGTTCTGCAGCTTGGAAACAACAGCTTCACCGGGCAGATACCGGGGGAGCTGGCCAATTGCAGCAGTTTGGTGTGGTTGGACTTGAACAGCAACAAGCTCACAGGTGAGATTCCACCAAGACTTGGAAGGCAGCAAGGAGCAAAGTCATTGTTTGGAATTTTGTCAGGAAACACTTTGGTGTTTGTGAGGAATGTTGGAAACTCGTGCAAAGGTGTTGGGGGTTTGTTGGAATTCTATGGAATAAGGCCTGAGAGACTCTTGCAGGTTCCAACACTAAGGACCTGTGATTTCACAAGGCTGTATTCAGGTCCTGTTCTTAGTCTTTTCACAAAGTATCAGACTCTGGAGTATCTTGATCTCTCCTACAACGAGCTCCGAGGAAGAATCCCCCAAGAATTCGGGGACATGGAGGCCCTGCAGGTTCTTGAGTTGTCTCACAATCAGTTATCTGGAGAAATCCCTTCAACATTAGGCCAGCTAAAGAATTTGGGAGTGTTTGATGCATCACACAATAGATTGCAGGGCCATATCCCTGACTCATTCTCAAACCTGTCATTCTTGGTGCAGATTGATCTATCAAACAATGAGTTAACAGGGGAGATTCCATCTAGAGGGCAATTGAGCACACTTCCAGCTTCTCAATCAGCAACTGCAGCATGGGCTAACAGCATTGTCATGGGGATTCTGATTTCTGTGGCTTCTGTTTGTATTTTGATCGTGTGGGCAATCGCGATGCGGGCGAGGAGGAAGGAGGCAGAGGAAGTGAAGATGCTTAATAGCTTGCAGGCATCACATGCTGCCACAACATGGAAGATTGACAAGGAGAAAGAGCCTCTAAGCATCAATGTTGCAACCTTTCAGAGGCAGCTTAGGAAGCTGAAATTCTCACAGCTGATCGAAGCAACCAATGGATTCTCAGCAGCAAGCCTAATTGGTTGTGGTGGTTTTGGTGAAGTGTTCAAGGCCACACTGAAGGACGGTTCAAGTGTTGCAATAAAGAAGCTCATTAGGCTGAGCTGCCAGGGTGATAGAGAATTCATGGCTGAGATGGAAACCTTGGGGAAGATCAAGCACAGAAACCTAGTCCCTCTGTTGGGATACTGCAAAGTTGGGGAAGAGAGGCTGCTTGTGTATGAGTACATGGAGTATGGAAGCCTGGAGGAGATGCTCCACGGCAGAACAAAGTCGCGCGACCGGCGAATTCTGACATGGGAAGAGAGGAAAAAGGTTGCAAGAGGTGCTGCCAAAGGACTTTGTTTCCTTCACCACAATTGCATCCCACACATAATACACAGAGACATGAAATCAAGCAATGTGCTGCTTGATCATGAAATGGAGTCAAGAGTGTCTGATTTCGGAATGGCAAGGCTCATAAGTGCACTTGACACACATCTCAGCGTCAGCACATTGGCCGGAACACCTGGCTATGTTCCACCCGAGTACTACCAAAGCTTCAGGTGCACGGCAAAGGGAGATGTCTACTCTTTTGGAGTTGTCATGCTTGAATTGTTAACCGGAAAGCGCCCCACCGATAAGGAGGACTTTGGAGACACCAATTTGGTCGGATGGGCCAAGATGAAGGTTCGCCAAGGGACTCACATGGAAGTCATTGATCCTGATTTGCTTCAGGTCTGTCAAGGTTCAGATGAAGCTCAGCTCAATGAAGTTAAGGACATGCTTCGCTTCTTGGATATCACTCTGCAGTGCGTTGATGACTTGCCTTCTAAGAGGCCAAACATGTTGCAGGTTGTTGCCATGCTCAGAGACCTTCATCATGGAACCACCAACACTGCTTGA 3315 0.4534 MENNNNKRNPLPHFPRLTLTTITLMIFLVTMMFPVTEEAAAPVSSSIKTDEQALLMFKKMVQKDETGALSGWQLNRNPCTWFGVSCTHGRVTQLDLSGHGLSGTITLDPLSSLDMLSVLKLSLNSFSVNSTSLLTLPYSLTQLDLSFAGVSGPIPDNFFSRCPNLVVVNLSYNNMTGPIPDNFLQNSDKLQSLDLSSNNLSGSISGLKIDCNSLLQLDLSENRLSDSIPISLSNCTSLKSLNLGNNLISGEIPKALGNLNSLQTLDLSRNQLIGWIPFEFGNVCASLVELRLSFNNLTGSIPSSFSSCTWLQLLDISNNNMSGPLPDSIFHNLGSLQELRLGNNAISGPFPSSISSCKKLRIVDFSSNKFYGSIPRDICPGAASLEELRMPDNLITGEIPSQLSKCSQLKTLDFSLNYLNGSIPEELGQLENLEQLIAWFNGLEGKIPPKLGKCKKLKDLILNNNHLTGEIPSELFNCSNLEWISLTSNELSGEIPREFGLLTRLAVLQLGNNSFTGQIPGELANCSSLVWLDLNSNKLTGEIPPRLGRQQGAKSLFGILSGNTLVFVRNVGNSCKGVGGLLEFYGIRPERLLQVPTLRTCDFTRLYSGPVLSLFTKYQTLEYLDLSYNELRGRIPQEFGDMEALQVLELSHNQLSGEIPSTLGQLKNLGVFDASHNRLQGHIPDSFSNLSFLVQIDLSNNELTGEIPSRGQLSTLPASQSATAAWANSIVMGILISVASVCILIVWAIAMRARRKEAEEVKMLNSLQASHAATTWKIDKEKEPLSINVATFQRQLRKLKFSQLIEATNGFSAASLIGCGGFGEVFKATLKDGSSVAIKKLIRLSCQGDREFMAEMETLGKIKHRNLVPLLGYCKVGEERLLVYEYMEYGSLEEMLHGRTKSRDRRILTWEERKKVARGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDHEMESRVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSFGVVMLELLTGKRPTDKEDFGDTNLVGWAKMKVRQGTHMEVIDPDLLQVCQGSDEAQLNEVKDMLRFLDITLQCVDDLPSKRPNMLQVVAMLRDLHHGTTNTA 1104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04836 1104 Gene3D Ribonuclease Inhibitor 49 159 IPR032675 -
Aip03g04836 1104 SMART LRR_typ_2 527 550 IPR003591 -
Aip03g04836 1104 SMART LRR_typ_2 259 282 IPR003591 -
Aip03g04836 1104 SMART LRR_typ_2 642 666 IPR003591 -
Aip03g04836 1104 SMART LRR_typ_2 333 357 IPR003591 -
Aip03g04836 1104 SMART LRR_typ_2 502 526 IPR003591 -
Aip03g04836 1104 SMART LRR_typ_2 284 307 IPR003591 -
Aip03g04836 1104 SMART LRR_typ_2 454 478 IPR003591 -
Aip03g04836 1104 Pfam BspA type Leucine rich repeat region (6 copies) 284 395 IPR026906 -
Aip03g04836 1104 ProSitePatterns Serine/Threonine protein kinases active-site signature. 935 947 IPR008271 GO:0004672|GO:0006468
Aip03g04836 1104 SUPERFAMILY L domain-like 597 716 - -
Aip03g04836 1104 PRINTS Leucine-rich repeat signature 190 203 - -
Aip03g04836 1104 PRINTS Leucine-rich repeat signature 259 272 - -
Aip03g04836 1104 Gene3D Phosphorylase Kinase; domain 1 770 886 - -
Aip03g04836 1104 Pfam Leucine rich repeat N-terminal domain 48 86 IPR013210 -
Aip03g04836 1104 SUPERFAMILY L domain-like 48 323 - -
Aip03g04836 1104 ProSiteProfiles Protein kinase domain profile. 811 1101 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g04836 1104 Pfam Protein tyrosine and serine/threonine kinase 815 1092 IPR001245 GO:0004672|GO:0006468
Aip03g04836 1104 SMART serkin_6 811 1093 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g04836 1104 Pfam Brassinosteroid receptor island domain 557 615 IPR045381 -
Aip03g04836 1104 ProSitePatterns Protein kinases ATP-binding region signature. 817 840 IPR017441 GO:0005524
Aip03g04836 1104 Gene3D Transferase(Phosphotransferase) domain 1 887 1103 - -
Aip03g04836 1104 SUPERFAMILY RNI-like 251 551 - -
Aip03g04836 1104 PANTHER LEUCINE-RICH RECEPTOR-LIKE KINASE FAMILY PROTEIN 721 1096 - -
Aip03g04836 1104 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 721 1096 - -
Aip03g04836 1104 ProSiteProfiles Leucine-rich repeat profile. 189 211 IPR001611 GO:0005515
Aip03g04836 1104 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 37 723 - -
Aip03g04836 1104 Gene3D - 560 616 - -
Aip03g04836 1104 Gene3D Ribonuclease Inhibitor 179 720 IPR032675 -
Aip03g04836 1104 Pfam Leucine rich repeat 140 200 IPR001611 GO:0005515
Aip03g04836 1104 Pfam Leucine rich repeat 614 655 IPR001611 GO:0005515
Aip03g04836 1104 Pfam Leucine rich repeat 214 272 IPR001611 GO:0005515
Aip03g04836 1104 SUPERFAMILY Protein kinase-like (PK-like) 792 1093 IPR011009 -
Aip03g04836 1104 PANTHER LEUCINE-RICH RECEPTOR-LIKE KINASE FAMILY PROTEIN 37 723 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04836 Aip-Chr3 132640327 132643903 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04836 50 1100 Receptor kinase-like Gene Family AT1G55610 47.950 0.0 974
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Aip03g04836 PK_Tyr_Ser-Thr 1.6e-43 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04836 03 132640327 132643903 Aip03g04836 03 132640327 132643903 ECH