LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip03g04827	ATGATTGTTTATTTTATTCCGAAGGATCCATTGGAGAGGCAATATACAGGAGATGGCACAGTTGACTATGAAGGCAACCCAGTTCCTAAGGAGAATACTGGCGGGTGGAGAGCATGTGCATTTATCCTTGGAAACGAGTGCTGTGAACGTTTGGCTTTCTTTGGTATTTTAACAAATCTTGTTACCTATCTTACCAACAAACTACATCAAGGAAATGCCTCTGCTGCAAAAAATGTTACCATCTGGCAAGGCACTTGTTATCTTACAACTCTGATTGGAGCTGTTCTAGCAGATACATATTGGGGAAGATATTGGACAATTGGTGTTTTTTCCACTATTTATTTCTTGGGGCTGTGTATATTGACTCTTTCTGCATCAGTTCCTGCTTTGAAGCCTCCTGAATGCTTGGGTTCTCATTGTCCTCCAGCTACTCCTGCACAATATTTTGTGTTCTACTTTGGTCTCTATGTGGTTGCCCTTGGAACTGGAGGTGTAAAAACATGTGTGTCATCTTTTGGGGCAGATCAGTTTGATGATACTGATTCTAAGGAAAGAATTACTAAAGCATCCTTTTTCAACTGGTATTACTTCTCTATTTACCTAGGTGCTCTTGCATCAAGCACCTTCATTGTGTGGATTCAAGACAATGTAGGATGGGCTCTTGGTTTTGGCATTCCCGCTTTATTTATGGGAGTATCGATTGTAAGCTTCTTTTTAGGCACACCAATCTATAGGTTTCTAAAACCAGGGGGGAGCCCCATTAAAAGAATTTGCCAGGTTTTGGTAGCATCTGCCCGAAAGCAGGAGTTGGCTGTCCCTGAGGATAGCAGTCTCCTGTATGAGACAGCAGACAAGAAATCTGCTATCGAAGGGAGCCGCAAACTGGAGCATAGTGATGACATGAGGTGCCTCGATAAAGCAGCTATAGTGTCTGATGCTGAGAGCAAAATTGATTATTTTCCTGATCCATGGAGACTCTGCACTGTGACACAAGTTGAGGAACTGAAGATCTTGCTCCGCATGTTCCCAATTTGGGCTTCAGGAATCATTTTTGCTGCTGTCTATTCCCAGATGGCAACCTTGTTTGTGGAACAAGGAACGATGATGAACACAACTATCGGTTCCTTCAAGATCCCTCCAGCTTCCCTCTCATGTTTTGATGTGATAAGTGTTGTTGTGTGGGTCCCCATCTATGACAAGATACTTGTTCCACTTGCCAAGAAAATTAACGGCACGGAGAGGGGAATTTCTGTGTTTTATAGAATGGGAATTGGCCTTCTTGTTTCGGTTGCATGCATGTCGGCCGCAGCTGTGGTGGAGATCATGCGTCTGCAGCGTGCGAGAGAGCTCGACCTTATTGACAAACATGTTGCTGTACCCATTAGTGTGCTCTGGCAAATACCTCAATACTTCTTATTGGGTGCATCCGAGGTATTCATGTTCGCCGGACAGGTTGAGTTCTTCTACGATCAATCTCCGGATGCTATGCGGTCTTTATGCACAGCACTGCCACTTGTGAGTTTTGCACTGGGGAACTACTTGAGCTCTTTCATTCTTACCGTGGTAATTCACTTTACGACACAAGGCGGAAAACCGGGATGGATACCGGATAACTTGAACGAAGCCATTAGAGAACAAGAAATGGAACATTTGGAGGAACCCATAACACTTTTGGAAGATGGTCTTTTGCAGAATGAAGACTCTATTCACACTGGAGATGGGACAGTGAACATCAAGGGAGAGGTTGCCATCAAGAGCGAAGGTGGGACATGGAAAGCATGCCCCTTTGTTCTAGGTACTTTCTTCTGCGAACGGTTGGCCTATTATGGAATTGCCAGTAATCTTGTCACCTATCTAACAACCAGACTTCATGAAGGGCCTGTTTCTGCAGCAAGAAATGTTACCACCTTTCAGGGAACATGCTACCTTACACCTCTGCTTGGATCCTTCCTTGCTGATGCATACTGGGGAAGATATCGGACAATCGTTGTGTTCTATGGAATTTATCTCATTGGAATCTGCACATTGACCCTTTCAGCAATCTTTTCAGCTCAAAGTGCTGTATTCTTCCTTGGAATCTATTTGATTGCAGTAGGGACTGGTGGGATCAAGCCATGTATATGGCCCTTTGGAGCAGACCAGTTTGATGATACAGATCATAAGGAAAGAGCAAGTAAAGCATTATTCTTCAATTGGAACTACTTCACTAGCAACATTGGTGCACTCATAGCAACCACCATATTGGTATGGACCGAAGAAAATATAGGATGGGGACTTGGATATGGCATTGCAGCATCGTTTATTGGTATTGGAATGATAGTGTTCTTTCTTGGTACACGTACCTACCGTTTTCTTAGGCCAGGGGGAAGTCCTATTACAAGAATCTGCCAAGTGGTTGTTGCTTCTTTACATAAGAGGAAATTGGAGGTACCTCAAGATACCTCTCTCCTCTATGAAACTGTGGCAGAGAATTCATCTGTTGAAGGAAGTCTTAAACTCGAGCATACCAATGGATTGAGGTGCCTTGACAAAGCTGCAGTGAAATCAGATATAGAAAAAGGGAGTGAGGAAGTAACTAATCCTTGGAGGCTTTGCACCGTGACACAGGTGGAAGAGCTGAAGATTCTAATCCGCATGATTCCAATCTGGGCAACAGGAATCATCTTCAGTTCTGTCTATGCTCAAATGTCCTCGCTGTTCATTGAACAAGGGAAAATGATGGACAGGACTATTGGTTCTTTCACAATTCCCGCGGCATCTCTTTCAACTTTTAATATAGTTGGTGTCATCATTTGGGTTCTCATCTATGATAGAGTGATTGTTAAAGTTGCAAGACACTTCACTGGCAATGCAAGAGGCTTCACAGTGTTGCAGAGAATGGGAATTGGCCTGTTTCTCTCCATGACTTGCATGTCAGCTGCAGCTATATTAGAGAGCAAGAGATTACAAATAGCACAAGAACATGGATTGGTAGATGAAGATGTTTCTATTCCACTTAGCATACTGTGGCAAATACCTCAGTATTTTTTGCTAGGTGCTGCAGAGGTGTTCAACTTTATAGGACAGCATGAGTTCTTCTATGAGGAAGCGCCGGATAGGATGCGAAGTTTCTGCAGCGCGTTGGCGCTTCTGACAAATTCACTGGGAAATTACCTGAGTTCTTTTGTTGTCACAATTGTTGCTAGACTCACAAGAAAGGATGGAAGTCATGGATGGCTACCAGATAATTTGAATGAGGGCCATCTTGATTACTTTTTCTGGCTTCTAGCTGCACTTAGTTTCTTAAATATGTTGGTTTACATTGTCTATGCTAGAATGTACAAACAGAAGGCATATCGCAGGAACCTTTCTCAAAGGCTTAATTAA	3366	0.4317	MIVYFIPKDPLERQYTGDGTVDYEGNPVPKENTGGWRACAFILGNECCERLAFFGILTNLVTYLTNKLHQGNASAAKNVTIWQGTCYLTTLIGAVLADTYWGRYWTIGVFSTIYFLGLCILTLSASVPALKPPECLGSHCPPATPAQYFVFYFGLYVVALGTGGVKTCVSSFGADQFDDTDSKERITKASFFNWYYFSIYLGALASSTFIVWIQDNVGWALGFGIPALFMGVSIVSFFLGTPIYRFLKPGGSPIKRICQVLVASARKQELAVPEDSSLLYETADKKSAIEGSRKLEHSDDMRCLDKAAIVSDAESKIDYFPDPWRLCTVTQVEELKILLRMFPIWASGIIFAAVYSQMATLFVEQGTMMNTTIGSFKIPPASLSCFDVISVVVWVPIYDKILVPLAKKINGTERGISVFYRMGIGLLVSVACMSAAAVVEIMRLQRARELDLIDKHVAVPISVLWQIPQYFLLGASEVFMFAGQVEFFYDQSPDAMRSLCTALPLVSFALGNYLSSFILTVVIHFTTQGGKPGWIPDNLNEAIREQEMEHLEEPITLLEDGLLQNEDSIHTGDGTVNIKGEVAIKSEGGTWKACPFVLGTFFCERLAYYGIASNLVTYLTTRLHEGPVSAARNVTTFQGTCYLTPLLGSFLADAYWGRYRTIVVFYGIYLIGICTLTLSAIFSAQSAVFFLGIYLIAVGTGGIKPCIWPFGADQFDDTDHKERASKALFFNWNYFTSNIGALIATTILVWTEENIGWGLGYGIAASFIGIGMIVFFLGTRTYRFLRPGGSPITRICQVVVASLHKRKLEVPQDTSLLYETVAENSSVEGSLKLEHTNGLRCLDKAAVKSDIEKGSEEVTNPWRLCTVTQVEELKILIRMIPIWATGIIFSSVYAQMSSLFIEQGKMMDRTIGSFTIPAASLSTFNIVGVIIWVLIYDRVIVKVARHFTGNARGFTVLQRMGIGLFLSMTCMSAAAILESKRLQIAQEHGLVDEDVSIPLSILWQIPQYFLLGAAEVFNFIGQHEFFYEEAPDRMRSFCSALALLTNSLGNYLSSFVVTIVARLTRKDGSHGWLPDNLNEGHLDYFFWLLAALSFLNMLVYIVYARMYKQKAYRRNLSQRLN	1121

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip03g04827	1121	Gene3D	MFS general substrate transporter like domains	563	1115	IPR036259	-
	Aip03g04827	1121	SUPERFAMILY	MFS general substrate transporter	26	526	IPR036259	-
	Aip03g04827	1121	Gene3D	MFS general substrate transporter like domains	9	549	IPR036259	-
	Aip03g04827	1121	SUPERFAMILY	MFS general substrate transporter	588	1110	IPR036259	-
	Aip03g04827	1121	PANTHER	OLIGOPEPTIDE TRANSPORTER-RELATED	580	1110	IPR000109	GO:0016020\|GO:0022857\|GO:0055085
	Aip03g04827	1121	PANTHER	OLIGOPEPTIDE TRANSPORTER-RELATED	23	541	IPR000109	GO:0016020\|GO:0022857\|GO:0055085
	Aip03g04827	1121	Pfam	POT family	659	1073	IPR000109	GO:0016020\|GO:0022857\|GO:0055085
	Aip03g04827	1121	Pfam	POT family	104	535	IPR000109	GO:0016020\|GO:0022857\|GO:0055085
	Aip03g04827	1121	ProSitePatterns	PTR2 family proton/oligopeptide symporters signature 1.	93	117	IPR018456	GO:0006857\|GO:0016020\|GO:0022857
	Aip03g04827	1121	PANTHER	PROTEIN NRT1/ PTR FAMILY 8.3	580	1110	-	-
	Aip03g04827	1121	PANTHER	PROTEIN NRT1/ PTR FAMILY 8.3	23	541	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip03g04827	Aip-Chr3	132537844	132545703	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip03g04827	13	542	Organic Solute Cotransporters	AT2G02040	68.868	0.0	790

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip03g04827	03	132537844	132545703	Aip03g04827	03	132537844	132545703	ECH