Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04773 ATGGGCAAATCGGCTCTTTGGCTCACCACATTCACCCTCGTGTTGACGGGCTTCCTGACGGCCCGGGCTCAGCCAGAGGCAAACTTCAAGTGCAGCAGCAGCACGAACGCCACGTGTCGAGCTCTAATCGACTACTTTAGCCAGAATGCGACCACGCTCCGAGACATCCAGAAGCTGTTCAACGTGAAGCACCTCCCGGACCTATTGGGCGCAAATGCCAACACGATCCCGGAAAACGCGTCAGGCAGTTACAGCGTGGCGCCCAAGCAGGTAGTTAGGATTCCGTTTCCGTGCAAGTGCAGTAACGGAACGGGGCTGTCGAACCACGTGCCGTTGTACAAAATCAAGCCTGGTGATGGCTTGGACTACATAGCAAGGACAGTGTTCGCGGGCGTGGTGACGTTTCAGCAGATCCAGAAGGCTAATAATATCTCTGACCCCAATAAGATCATCGCTGGGGATTCCATTTGGATACCGTTGCCTTGTAGCTGTGATAGTGTTGGAGGGAGCAGTGTGGTGCACTATGCTTACATAGTTCCACTTGGAAGCTCCGTGGAGGGGATTGCACAGGAGTTTGGTACCACTGAACAGATCATTCTTAGTCTCAACGGTATTGATGACCCTAAGAAGCTTCAGGCTCAGCAGGTTATCGATGTCCCTCTCAAAGCTTGTTCCACAAGTGTTAAAAACAATTCCATGGACTACCCTCTGCTGGTTTCAAACTCCACTTACGTCTACACTGCCAACGAATGCGTAAAATGCAAATGCGACTCCAGCAACAACTATGTATTGCAATGCGAGCCATCGCAGCTTAAACCAACAGGGGGAAAGTGGTCGGTATGCCCCTCCATGAAATGCACAGGGAACCTGACAATTGGCAACTTGACATCTGCTTCAGATGATCCATGCACCGCACCTTCTGTGCCTATGCGGGTTATAGCTCCAAAAGAATCAATACCATTCTTGCTAATGAGTCCACTTGTCCTGCACCGGCACCTGCACCCAGTGGCGGTTCAGTAG 1020 0.5147 MGKSALWLTTFTLVLTGFLTARAQPEANFKCSSSTNATCRALIDYFSQNATTLRDIQKLFNVKHLPDLLGANANTIPENASGSYSVAPKQVVRIPFPCKCSNGTGLSNHVPLYKIKPGDGLDYIARTVFAGVVTFQQIQKANNISDPNKIIAGDSIWIPLPCSCDSVGGSSVVHYAYIVPLGSSVEGIAQEFGTTEQIILSLNGIDDPKKLQAQQVIDVPLKACSTSVKNNSMDYPLLVSNSTYVYTANECVKCKCDSSNNYVLQCEPSQLKPTGGKWSVCPSMKCTGNLTIGNLTSASDDPCTAPSVPMRVIAPKESIPFLLMSPLVLHRHLHPVAVQ 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04773 339 CDD LysM 113 158 IPR018392 -
Aip03g04773 339 ProSiteProfiles LysM domain profile. 111 158 IPR018392 -
Aip03g04773 339 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 22 309 - -
Aip03g04773 339 Gene3D LysM domain 112 167 IPR036779 -
Aip03g04773 339 Gene3D LysM domain 169 233 IPR036779 -
Aip03g04773 339 SUPERFAMILY LysM domain 112 160 IPR036779 -
Aip03g04773 339 SMART LysM_2 112 159 IPR018392 -
Aip03g04773 339 SMART LysM_2 176 220 IPR018392 -
Aip03g04773 339 CDD LysM 177 219 IPR018392 -
Aip03g04773 339 ProSiteProfiles LysM domain profile. 175 219 IPR018392 -
Aip03g04773 339 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 22 309 - -
Aip03g04773 339 Pfam LysM domain 113 159 IPR018392 -
Aip03g04773 339 Pfam LysM domain 177 220 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04773 Aip-Chr3 132020562 132023491 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04773 1 290 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 50.000 2.46e-92 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04773 - - gmx:100804190 373.629