Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04326 ATGATGATGGAGGAGAGGAAGAAGTTTGTGTGCAAGTATTGCAGCAAGAGGTTTCCATGTGGCAAGTCTCTTGGTGGTCACATCAGGACCCACATCACTGAAGAAAGAACCACCATCAATGCTTCTTCTTCTCCCATTGCTGCTAACACTCATGATCTTCTTCTCAAGAAGAGGAAGAGGGATTCATCATGGCCTACTCAATCTGCTGCTGGTGGTGGTGGTGGTGGTGCTGCTGCTGGTAACAATAATAATAGCCCCATTTATGGGCTAAGGGAGAATCCCAAGAAGACAACAAGGTTTGTGCATATTGATGGTGCTGCTGCCACCAACTTGGCACGTGAGAAGGAAGAAAGGTTCTGCAAGGAATGTGGGAAAGGCTTTCCATCAATGAAAGCTCTGTGTGGCCACATGGCTTGTCACTCTGACAAAGACAAAGACAGAGAGAAATTGGTGGTTATGGCTATGGATGATGATGGTGATGATGATGAATATGGTGATAATAATAGCCAATCTGATGCTGAGAGTTCTGGTGGTGCTGCTGCTTCGTTGCTTCCAAGGAGGAGATCCAAAAGGATGATGAGGTTCAAGAATCTCAGACCCTTTTGTTCTTCTTCTCCATCTGCTTCTGTCTCTGAAGTGGAGCAGCAGCAGGAGGAGCAAGAAGAGGTTGCTAGGATGCTCATGATGCTCTCAAGAGATTCCGGCCGGAGGGGTCGATTCGTGTCTCTTACTGAGTCTTCTGATAACAATTCTGTTGTTCTTAACACCAATAAGGTTGCTGCTGTGACTGTGAGTAATAACAATGGCAGGAAGAACTTTGTGCCTAATGATTCAGATTCAGCTGCTGGGTCTCTGAGGAGTGGCCTCAAGAACAAAATGGTTGATTCAGATGTCTCAATTGATGAATTCAAAGGGTGGAAGAATGTTAAAGATAAAGACAAAGAGAGAAGAAGCAAATACAGTAGTACTGTTGCTTTTGCTGCTGCAGTTAAGGATTTGGAATATGAAACAACAATATCTACTACTGCTACTACAAGGAAGAAGTTTGATTTCAGAAAGAGAGCAAATTATGATTCTCTTATTCACAGTTCAACTGAGGTTCCTACCAAGAATGAAAAAACTGGTTTTGCCAATGATGAATATGATGATTGTTCTTATGATTCAACAGAATATGATGATGTTGATGAAGATGAAGAGAGTGATGAGAACAGCACTGATACTGATACTGATTCATTTCCTGCTCCAAAGGCTCATAGCACTAAGGCCAGCACAAAGGCTAATAAGAAAAAGAAGAACATGACGAAGAAGAAGAAGTTGAAGTCAAAGAAAAGCAAGGAACACGAATGTCCAATTTGCTACAAGATTTTCAAGTCAGGACAAGCATTAGGAGGACACAAAAGATCCCATTTCATTGGAGGTTCATCAGAGGAGAACACTTTGGTCATCAAGCAGCATCATGCTGCTCCTTCTTCTCTTGTTGTTGTTCCTAATTGCCTAATTGATCTCAATCTTCCTGCTCCTGTTGATGACTAA 1533 0.424 MMMEERKKFVCKYCSKRFPCGKSLGGHIRTHITEERTTINASSSPIAANTHDLLLKKRKRDSSWPTQSAAGGGGGGAAAGNNNNSPIYGLRENPKKTTRFVHIDGAAATNLAREKEERFCKECGKGFPSMKALCGHMACHSDKDKDREKLVVMAMDDDGDDDEYGDNNSQSDAESSGGAAASLLPRRRSKRMMRFKNLRPFCSSSPSASVSEVEQQQEEQEEVARMLMMLSRDSGRRGRFVSLTESSDNNSVVLNTNKVAAVTVSNNNGRKNFVPNDSDSAAGSLRSGLKNKMVDSDVSIDEFKGWKNVKDKDKERRSKYSSTVAFAAAVKDLEYETTISTTATTRKKFDFRKRANYDSLIHSSTEVPTKNEKTGFANDEYDDCSYDSTEYDDVDEDEESDENSTDTDTDSFPAPKAHSTKASTKANKKKKNMTKKKKLKSKKSKEHECPICYKIFKSGQALGGHKRSHFIGGSSEENTLVIKQHHAAPSSLVVVPNCLIDLNLPAPVDD 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04326 510 MobiDBLite consensus disorder prediction 422 443 - -
Aip03g04326 510 MobiDBLite consensus disorder prediction 407 421 - -
Aip03g04326 510 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Aip03g04326 510 ProSiteProfiles Zinc finger C2H2 type domain profile. 118 145 IPR013087 -
Aip03g04326 510 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 510 - -
Aip03g04326 510 ProSitePatterns Zinc finger C2H2 type domain signature. 120 140 IPR013087 -
Aip03g04326 510 MobiDBLite consensus disorder prediction 58 93 - -
Aip03g04326 510 SUPERFAMILY beta-beta-alpha zinc fingers 7 140 IPR036236 -
Aip03g04326 510 MobiDBLite consensus disorder prediction 383 406 - -
Aip03g04326 510 Pfam C2H2-type zinc finger 9 31 - -
Aip03g04326 510 Pfam C2H2-type zinc finger 447 469 - -
Aip03g04326 510 Pfam C2H2-type zinc finger 120 142 - -
Aip03g04326 510 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 510 - -
Aip03g04326 510 MobiDBLite consensus disorder prediction 369 443 - -
Aip03g04326 510 ProSiteProfiles Zinc finger C2H2 type domain profile. 447 469 IPR013087 -
Aip03g04326 510 SMART c2h2final6 447 469 IPR013087 -
Aip03g04326 510 SMART c2h2final6 118 140 IPR013087 -
Aip03g04326 510 SMART c2h2final6 9 31 IPR013087 -
Aip03g04326 510 MobiDBLite consensus disorder prediction 157 188 - -
Aip03g04326 510 ProSitePatterns Zinc finger C2H2 type domain signature. 449 469 IPR013087 -
Aip03g04326 510 Gene3D Classic Zinc Finger 2 66 - -
Aip03g04326 510 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 36 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04326 Aip-Chr3 127716878 127719312 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip03g04326 zf-C2H2_6 1.3e-09 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04326 03 127716878 127719312 Aip03g04326 03 127716878 127719312 ECH