Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04289 ATGTCGGAAGTTAAGGACCCGGCGATAAAGCTTTTTGGGAGGACGATTCAGCTGCCACTGATCCCCAATGACCCTTCTCCACCACCACCACCACCACCACCTCCTCCTCCTCCTCCTCCTCCTCCTCCATCTTCTTCTTCTCCACCAACTGAAGTTGAAGTGAGTTCTGTATCACAACCAGAAACAGAGGAACCATCAAAGAGAGAACTAACCTCAACACAAGATAAAGAAACCACAGAGGATTTGAAATCTCCCACAACAACATCTTCAGGCATATTTGAGAACCCAAAGACTCCCACAAATGGTGGAGAACAGAGTGAGACCAGTGTTTCACAAGAAAAAACTCCCAAGAAACCGGACAAGATACTTCCGTGTCCGCGATGCAACAGCATGGACACCAAATTCTGCTACTACAACAATTACAACGTCAATCAGCCGCGTCATTTCTGCAAGAACTGTCAGAGATACTGGACTGCCGGAGGAACAATGAGGAACGTGCCGGTAGGCGCTGGTCGCCGAAAGAACAAAAACTCTGCTGCATCGCATTATCGCCAGATAATGGTCCCGGAGGCGCTTCAAGCAGCTCACCATGGACTACACAATGCTGTCTTGACCTTTGGCCCAGATTCTCCTCTTTGTGATTCCATGTCCTCTGTCTTGAACATTGCGGAAAAAGCCACAAATGGTGTTGTAAACGGGTTTCATGCACCGGAGGCAGCAACTACTTTTGTTTCCTATGGTAGGGATGATGATGGGAATGATCACTCAGTTGGAGTTTCTGGTACAACTTCAACTTCATCAGAGAGGAGAGGCCATGCCAGCTCTCATGAATCGGCGGATAAAAGAGTCGAAAGTTTCCCTCCTCAACTAACTTACTTCCCAAGTAATTCTCCATGGCCGTATCCATGGAATTCGCCAATGCCTCCTCCTCCCACATTTTGCCCTCCAGGCTATCCTATGTCGATATACACCACCCCTTCATACTGGGCATGGAATGTGCCATGCATCTCACCCCAATCTCCGGCCCCTGGTTCCGGCCCAAATTCGCCGTTGGGGAAACACTCAAGGGATGGTAACATCATAACCCCGGCCAATTCGCAAAAGGAAAAGCCTAACACAGAAAGCAATAATGTGTTGATCCCCAAGACACTTAGAATTGATGATCCTAGTGAAGCTGCAAAGAGTTCAATATGGTCAACACTAGGAATCAAGAATGAGAAGGCCAACTCTCTCAATGGAGGAGGCCTCTTCAAGGCGTTCCCTTCCAAGGGTAACGACAAGAGTCACGTGGTCGAGGCGTCGCCGATGCTGCACGCCAACCCTGCCGCCCTGACGCGGTCTCTCACCTTCCACGAGCGGACCTAG 1365 0.4952 MSEVKDPAIKLFGRTIQLPLIPNDPSPPPPPPPPPPPPPPPPPSSSSPPTEVEVSSVSQPETEEPSKRELTSTQDKETTEDLKSPTTTSSGIFENPKTPTNGGEQSETSVSQEKTPKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSAASHYRQIMVPEALQAAHHGLHNAVLTFGPDSPLCDSMSSVLNIAEKATNGVVNGFHAPEAATTFVSYGRDDDGNDHSVGVSGTTSTSSERRGHASSHESADKRVESFPPQLTYFPSNSPWPYPWNSPMPPPPTFCPPGYPMSIYTTPSYWAWNVPCISPQSPAPGSGPNSPLGKHSRDGNIITPANSQKEKPNTESNNVLIPKTLRIDDPSEAAKSSIWSTLGIKNEKANSLNGGGLFKAFPSKGNDKSHVVEASPMLHANPAALTRSLTFHERT 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04289 454 SUPERFAMILY Formin homology 2 domain (FH2 domain) 32 402 - -
Aip03g04289 454 MobiDBLite consensus disorder prediction 359 374 - -
Aip03g04289 454 ProSiteProfiles Zinc finger Dof-type profile. 123 177 IPR003851 GO:0003677|GO:0006355
Aip03g04289 454 MobiDBLite consensus disorder prediction 245 285 - -
Aip03g04289 454 PANTHER CYCLIC DOF FACTOR 2 1 454 IPR045174 GO:0003700|GO:0006355
Aip03g04289 454 ProSitePatterns Zinc finger Dof-type signature. 125 161 IPR003851 GO:0003677|GO:0006355
Aip03g04289 454 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 454 - -
Aip03g04289 454 MobiDBLite consensus disorder prediction 21 48 - -
Aip03g04289 454 MobiDBLite consensus disorder prediction 62 82 - -
Aip03g04289 454 Pfam Dof domain, zinc finger 120 177 IPR003851 GO:0003677|GO:0006355
Aip03g04289 454 MobiDBLite consensus disorder prediction 1 122 - -
Aip03g04289 454 MobiDBLite consensus disorder prediction 340 374 - -
Aip03g04289 454 MobiDBLite consensus disorder prediction 83 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04289 Aip-Chr3 127276319 127280486 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04289 1 453 C2C2-Dof Transcription Factor Family AT3G47500 43.892 5.12e-89 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aip03g04289 zf-Dof 2.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04289 - - gmx:100813315 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04289 03 127276319 127280486 Aip03g04289 03 127276319 127280486 ECH
Aip03g04289 03 127276319 127280486 Aip01g02113 01 114056179 114059452 ECH
Aip03g04289 03 127276319 127280486 Aip03g00010 03 116574 118862 ECH