Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04050 ATGCCACCTGGTGATACACCTTCGAAGCCTACTGCAACAACAAAAACATGCTCATCACCTAATACAAAAGATCATGAGAATTCCGACCAGCAAGGTGGAGGTGGTGGCCGGAAAACCACAAAGGCGGCAGCAGCAGAACAAGGACTAAAGTGCCCTCGATGTGACTCACCCAACACCAAATTCTGCTACTATAACAATTACAGCCTTACGCAGCCACGCCACTTCTGCAAGACTTGCCGCCGCTACTGGACAAAAGGCGGAGCCCTGCGCAACGTCCCCATAGGCGGTGGATGCCGCAAAAGCAAGAAAGGGAAGCCCTCGTCGTCGTCCTCCATCTCTTACTCAAGGGCATTTTCATGCGACTCCTCCAGGGACTCTGGTTCTTCCTCTGACCTCGCTGGCCTTAGGTACCTCCATGGGCTTTCTTCTCCTCCCATGGATTTTCACCTTGGAGGGTTAACTTTCCCTGTCCCTTCTAGGCTGCAACATCATCATCAACCTCCAATGGCTACTACAGCTGCTTTCTATAACAACCAGTTCTCTTCTTTTGGGGATGTTGTTCCGGGAGCTACTACTACTGCTTCTGCTTCTGCTTCTTCCGCCATTGATTATCCCTCGGGGAGTTCTTTGATTGGTCTGAACTATCCGTTTTGTTCTTCAGATGGAAGCGGTAGTAATGGTGCAATAATCCATGGCGGTATGAACAATAACTTTGAGGGTAGTAGTAGCCTTGCGTCTTCGATTGAGTCGTTGAGTTCCTTGAACCAAGACTTGCATTGGAAGCTTCAGCAGCAAAGGTTGGCAATGCTCTTTGTCGGAGACAACCACCACAAAGAAGATCACAACAACAGCAACCGCAACGGCAACGTTTCTTTTTCTCCCGTGGTTGTTGATCTTGATCATCATCATCATCATCATCAGCAGCAGCAGCAGCAGCAGAGACCCCAACCAATTTTATTTGAGAATCTTGAAATTTCAAAGGCAGGTGCAGGTGCTACTACTGTAGATGCAGATACTAGAGCCACAGAATGGTTCTTCGGGAATTCTCATGCTCCTACTCCAACGACTACTACCAGCAGCGGTTGCAATGGCCATGAAGATAGCTGGATGATGGGCAGCAGCGGTGTCCATGGTTGGCCTGATTTGCAACCGCACCCGCAGCAACAGTACAGTTCTTTGCCCTAG 1185 0.4937 MPPGDTPSKPTATTKTCSSPNTKDHENSDQQGGGGGRKTTKAAAAEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKSKKGKPSSSSSISYSRAFSCDSSRDSGSSSDLAGLRYLHGLSSPPMDFHLGGLTFPVPSRLQHHHQPPMATTAAFYNNQFSSFGDVVPGATTTASASASSAIDYPSGSSLIGLNYPFCSSDGSGSNGAIIHGGMNNNFEGSSSLASSIESLSSLNQDLHWKLQQQRLAMLFVGDNHHKEDHNNSNRNGNVSFSPVVVDLDHHHHHHQQQQQQQRPQPILFENLEISKAGAGATTVDADTRATEWFFGNSHAPTPTTTTSSGCNGHEDSWMMGSSGVHGWPDLQPHPQQQYSSLP 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04050 394 MobiDBLite consensus disorder prediction 1 41 - -
Aip03g04050 394 MobiDBLite consensus disorder prediction 103 126 - -
Aip03g04050 394 MobiDBLite consensus disorder prediction 8 35 - -
Aip03g04050 394 ProSiteProfiles Zinc finger Dof-type profile. 49 103 IPR003851 GO:0003677|GO:0006355
Aip03g04050 394 MobiDBLite consensus disorder prediction 94 126 - -
Aip03g04050 394 Pfam Dof domain, zinc finger 47 103 IPR003851 GO:0003677|GO:0006355
Aip03g04050 394 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 26 369 - -
Aip03g04050 394 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 26 369 IPR045174 GO:0003700|GO:0006355
Aip03g04050 394 MobiDBLite consensus disorder prediction 346 394 - -
Aip03g04050 394 MobiDBLite consensus disorder prediction 346 367 - -
Aip03g04050 394 ProSitePatterns Zinc finger Dof-type signature. 51 87 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04050 Aip-Chr3 124008869 124010143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04050 39 394 C2C2-Dof Transcription Factor Family AT5G65590 38.333 2.89e-62 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aip03g04050 zf-Dof 2.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04050 - - ahf:112791714 673.7