Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04000 ATGGTTCTGTCGAAGACGGCATCTGAGAGCGACGTCTCCGTGCACTCAACGTTTGCGTCACGCTATGTGAGGACCTCACTTCCCAGGTTCAAGATGCCGGAGGAGTCGATCCCCAAAGACGCCGCGTACCAGATAATAAATGACGAGCTGATGCTGGACGGAAATCCCAGACTGAACTTGGCGTCGTTCGTGACGACGTGGATGGAACCGGAGTGCGACAAGCTGATAATGGCTGCCATTAACAAGAACTACGTTGACATGGATGAATACCCTGTCACCACTGAGCTCCAGAATCGGTGTGTAAACATGATAGCTCATCTATTCAATGCGCCACTTGGAGATTCAGAAACTGCCGTTGGTGTTGGGACGGTTGGATCATCGGAGGCCATAATGCTGGCTGGATTGGCATTCAAAAGAAAATGGCAGAACAAAAGGAAAGAAGAAGGTAAGCCTTATGACAAGCCCAACATTGTGACCGGTGCCAATGTCCAGGTTTGCTGGGAGAAATTCGCAAGGTACTTTGAGGTGGAGTTGAAGGAGGTGAAGCTCCGTGATGGATACTATGTTATGGACCCTGAAAAGGCTGTGGACTTGGTTGATGAGAACACCATTTGCGTTGCTGCTATTCTTGGTTCCACCCTCAACGGTGAGTTTGAAGATGTCAAGCGCTTAAATGATCTTCTCATTCAAAAGAACAATCAAACCGGCTGGGATACTCCTATTCATGTTGATGCTGCCAGTGGTGGATTCATTGCTCCGTTTCTATATCCCGAGCTTGAGTGGGACTTCCGGTTACCGCTGGTCAAGAGTATCAATGTCAGCGGCCACAAGTACGGTCTAGTTTACGCCGGAATTGGCTGGGTTATCTGGAGAAGCAAGGATGACCTGCCTGAGGAACTCATCTTCCACATCAACTATCTCGGAGCTGATCAACCCACATTCACTCTTAACTTCTCCAAAGGTTCCAGTCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTATGAGGGATATAAAAATGTGATGGAAAATTGTAGGGACAACATGTTAGTGCTCAAGGATGGACTTGAGAAAACAGGGCGCTTTGACATTGTTTCCAAGGACGATGGTGTTCCTTTGGTGGCCTTCACACTCAAAGACAGCAGCCGCTTCAATGAATTCCAAGTCTCTGACTTGCTCAGGCGCTTTGGCTGGATAGTGCCGGCATACACCATGCCCCCGGATGCACAGCATGTTACCGTTCTCCGCGTGGTCATCCGGGAGGACTTCTCCAGGACCCTCGCAGAGCGCCTTGTGGCTGATGTGGAGAAGGTGCTTCACGAGCTTGATATGCTTCCCCCCAAGGTAGTTGCGGTTAATGGAGAAGAGGCAGCAACAAGCTCTAATGGCAAGGTTAAGAAGACTGCTCTGGAGACACAGAGGGAGATCACTGCAGTTTGGAAGAAGTTTGTACTGGAAAGGAAGAAGCTGAATGACAAGATGAATGGGGTTTGTTGA 1503 0.4897 MVLSKTASESDVSVHSTFASRYVRTSLPRFKMPEESIPKDAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKEEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLRDGYYVMDPEKAVDLVDENTICVAAILGSTLNGEFEDVKRLNDLLIQKNNQTGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKDDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYKNVMENCRDNMLVLKDGLEKTGRFDIVSKDDGVPLVAFTLKDSSRFNEFQVSDLLRRFGWIVPAYTMPPDAQHVTVLRVVIREDFSRTLAERLVADVEKVLHELDMLPPKVVAVNGEEAATSSNGKVKKTALETQREITAVWKKFVLERKKLNDKMNGVC 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04000 500 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Aip03g04000 500 PANTHER GLUTAMATE DECARBOXYLASE 1 500 IPR010107 GO:0004351|GO:0006536|GO:0030170
Aip03g04000 500 CDD DOPA_deC_like 59 439 - -
Aip03g04000 500 Gene3D - 66 360 IPR015421 GO:0003824
Aip03g04000 500 Gene3D - 361 448 - -
Aip03g04000 500 PANTHER GLUTAMATE DECARBOXYLASE 1 500 - -
Aip03g04000 500 Gene3D - 1 65 - -
Aip03g04000 500 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Aip03g04000 500 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04000 Aip-Chr3 123340897 123345489 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04000 1 500 Calmodulin-binding Proteins AT5G17330 82.806 0.0 881
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04000 03 123340897 123345489 Aip03g04000 03 123340897 123345489 ECH