Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03956 ATGGCGACAGAAGAGGATACTAAACTTCCTCCATACCCTGAGATGATAATGAAAGCAATTGAAGCTACGGGGGACAGCAATGGCGCAAACAAATCAGCCATATCAAACTACATAGAGTCCACCTATGGGGAGCTGCCAGCAGGGCACACAGAATTACTCTCCCACCACCTCAACAACATGAAGGAGAGTGGCGACCTCACGTTCTTGAAGAACAACTACATGAAGCCTGACTCTAATGCCCCACCAAAGAGGGGCCGAGGCAGGCCTCCAAAGCCCAAGGCCCCTCTCCCTCCGGGGACAGTCCTGTCCTCACCAAGGCCCCGGGGACGTCCCCCCAAGGACCCTAATGCCCCACCTACTGCCAAAGTGTCAAGTGGCAGGCCTCGAGGCCGGCCCAAGAAGGTTCCTAGGACCACGGACGAGTCTTTGTCATCGGTGTCACCTTATGCTTCCTCCACTGGAAGGCCAAGGGGCAGGCCTCCTAAGATGAAGCCTCACATGGCAGAAGTGAGTGTCGAATAA 522 0.5517 MATEEDTKLPPYPEMIMKAIEATGDSNGANKSAISNYIESTYGELPAGHTELLSHHLNNMKESGDLTFLKNNYMKPDSNAPPKRGRGRPPKPKAPLPPGTVLSSPRPRGRPPKDPNAPPTAKVSSGRPRGRPKKVPRTTDESLSSVSPYASSTGRPRGRPPKMKPHMAEVSVE 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03956 173 SMART AT_hook_2 154 166 IPR017956 GO:0003677
Aip03g03956 173 SMART AT_hook_2 105 117 IPR017956 GO:0003677
Aip03g03956 173 SMART AT_hook_2 83 95 IPR017956 GO:0003677
Aip03g03956 173 SMART AT_hook_2 126 138 IPR017956 GO:0003677
Aip03g03956 173 PRINTS High mobility group protein (HMGY) signature 103 115 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Aip03g03956 173 PRINTS High mobility group protein (HMGY) signature 117 128 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Aip03g03956 173 PRINTS High mobility group protein (HMGY) signature 128 139 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Aip03g03956 173 PRINTS High mobility group protein (HMGY) signature 143 162 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Aip03g03956 173 PRINTS AT-hook-like domain signature 83 93 IPR017956 GO:0003677
Aip03g03956 173 PRINTS AT-hook-like domain signature 103 114 IPR017956 GO:0003677
Aip03g03956 173 PRINTS AT-hook-like domain signature 124 134 IPR017956 GO:0003677
Aip03g03956 173 Pfam AT hook motif 154 164 IPR017956 GO:0003677
Aip03g03956 173 Pfam AT hook motif 105 116 IPR017956 GO:0003677
Aip03g03956 173 Pfam AT hook motif 126 136 IPR017956 GO:0003677
Aip03g03956 173 Pfam AT hook motif 83 91 IPR017956 GO:0003677
Aip03g03956 173 Gene3D - 5 86 IPR036388 -
Aip03g03956 173 SUPERFAMILY "Winged helix" DNA-binding domain 6 84 IPR036390 -
Aip03g03956 173 SMART h15plus2 6 72 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aip03g03956 173 MobiDBLite consensus disorder prediction 68 173 - -
Aip03g03956 173 PANTHER HISTONE H1 1 170 - -
Aip03g03956 173 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 8 77 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aip03g03956 173 MobiDBLite consensus disorder prediction 91 118 - -
Aip03g03956 173 Pfam linker histone H1 and H5 family 10 70 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aip03g03956 173 PANTHER HMG-Y-RELATED PROTEIN A 1 170 IPR031059 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03956 Aip-Chr3 122716616 122718332 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03956 03 122716616 122718332 Aip03g03956 03 122716616 122718332 ECH