Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03953 ATGAAGAGGGATCACAGTGAAGCTGGCTCCAGCTACGGCCAGCAAGGTAGCAGCAGCAGCAGCGTGGCCAAAGGCGAATGCTCGTCAATGTCGAGCGGGAAGGCCAAGATGTGGGAGGAAGACCACGACCCAAGCTCCGGCGGCGGCGGCGGCGGCATGGACGAACTCCTCGCTGCTCTTGGTTACAAGGTTCGCAACTCAGACATGGCTGACGTGGCCCAGAAGCTGGAGCAGCTGGAGATGGTTATGGGTACCGCGCAGGAAGACGGAATTTCACACCTCGCTACTGACACCGTTCACTACGACCCTACGGATCTATACTCCTGGGTGCAGAGCATGATCAATGAGCTCAACCCTCCCCCAACCACCGCCGCCGCAAACGGAACAAGCAGCTCACTGCTGTGCAGCTCCCAAATCGAGGAGAACACCTCACGCGCCTTCACGGACGACTCTGAGTACGACCTGAGAGCCATACCTGGCATCGCCGTTTACCCTCAAAACGACGAACCCAGCAACAAACGGCTGAAAACGAATCCTGTTCCAGAAATTGGGTCAGAGGGTGTTCAAGAACCGAGCCGGCCAGTTGTGCTTGTGGATTCCCAAGAAACAGGTGTCCGTCTAGTCCACACCCTCTTAGCCTGCGCGGAGGCAGTCCAGCAAGAAAACCTAAAGCTGGCAGACGCGCTAGTGAAGCACGTGGGGCTACTCGCGCAGTCGCAGGCCGGTGCCATGAAGAAAGTTGCATCTTACTTTGCACAGGCACTTGCGAGGAGGATTTACCAGATTTACCCTCAAGAAGCCATGGACTCTTCTTTCTCAGATGTGCTCCACATGCACTTCTACGAGTCCTGCCCTTATCTCAAATTCGCCCACTTCACAGCCAACCAGGCCATACTCGAGGCCTTCGCTTCTGCCACCAGGGTCCACGTCATCGATTTCGGCCTCAAGCAAGGGATGCAGTGGCCCGCACTCCTGCAGGCCCTCACATTGCGCCCCGGCGGCCCACCCACTTTCCGTTTGACTGGAATAGGCCCGCCGCAGACCGACAACACCGACTCCCTGCAGCAAGTCGGATGGAAGCTTGCACAACTGGCACAAACCATAGGCGTTCAGTTCGAGTTTCGCGGCTTCGTCTGCTCTAGCCTCTCGGATCTTGACACAGAAATGCTTGAGATCCGACCCGGAGAAGCCGTTGCGGTTAACTCCGTTTTCGAGTTGCATCGCATGCTGGCCCGCTCCGGCTCCATCGAGAAAGTTCTTGGCACGGTTAAGAAGATCAAGCCGAAGATCTTCACGGTGGTGGAGCAGGAAGCCAACCACAACGGTCCAGTTTTTGTGGATCGGTTCACGGAGGCGTTGCATTATTACTCGAGCTTGTTTGACTCGCTGGAGGGATCGGTGGCGGCGGGGTTGGCGGCGCCGCCGCCGACTGAGGACCTATTGATGTCGGAGCTGTACCTCGGGAGGCAAATTTGCAACNNNNNNNNNNNNNNNNNNNNNNTCGAACGCGTTCAAGCAGGCGAGCATGCTACTGGCGCTGTTTGCGGGTGGGGATGGGTACAGGGTGGAGGAGAACAATGGGTGCCTCATGCTTGGGTGGCACACCAGGTCCCTGATTGCGACCTCGGCGTGGAAGCTTCCACCCCTTTCTTCTGGCGGCGAGTCTTAGTGAGTTGA 1677 0.5677 MKRDHSEAGSSYGQQGSSSSSVAKGECSSMSSGKAKMWEEDHDPSSGGGGGGMDELLAALGYKVRNSDMADVAQKLEQLEMVMGTAQEDGISHLATDTVHYDPTDLYSWVQSMINELNPPPTTAAANGTSSSLLCSSQIEENTSRAFTDDSEYDLRAIPGIAVYPQNDEPSNKRLKTNPVPEIGSEGVQEPSRPVVLVDSQETGVRLVHTLLACAEAVQQENLKLADALVKHVGLLAQSQAGAMKKVASYFAQALARRIYQIYPQEAMDSSFSDVLHMHFYESCPYLKFAHFTANQAILEAFASATRVHVIDFGLKQGMQWPALLQALTLRPGGPPTFRLTGIGPPQTDNTDSLQQVGWKLAQLAQTIGVQFEFRGFVCSSLSDLDTEMLEIRPGEAVAVNSVFELHRMLARSGSIEKVLGTVKKIKPKIFTVVEQEANHNGPVFVDRFTEALHYYSSLFDSLEGSVAAGLAAPPPTEDLLMSELYLGRQICNXXXXXXXXERVQAGEHATGAVCGWGWVQGGGEQWVPHAWVAHQVPDCDLGVEASTPFFWRRVLVS 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03953 558 Coils Coil 69 89 - -
Aip03g03953 558 MobiDBLite consensus disorder prediction 166 188 - -
Aip03g03953 558 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 50 495 IPR005202 -
Aip03g03953 558 SMART DELLA_2 54 127 - -
Aip03g03953 558 Pfam Transcriptional regulator DELLA protein N terminal 54 121 IPR021914 -
Aip03g03953 558 MobiDBLite consensus disorder prediction 1 54 - -
Aip03g03953 558 Pfam GRAS domain family 207 496 IPR005202 -
Aip03g03953 558 Gene3D - 52 117 IPR038088 -
Aip03g03953 558 PANTHER DELLA PROTEIN RGL1 50 495 IPR030006 GO:0003712|GO:0005634
Aip03g03953 558 MobiDBLite consensus disorder prediction 8 28 - -
Aip03g03953 558 ProSiteProfiles GRAS family profile. 198 558 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03953 Aip-Chr3 122632026 122634372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03953 1 493 GRAS Transcription Factor Family AT2G01570 58.824 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aip03g03953 GRAS 6e-102 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03953 03 122632026 122634372 Aip03g03953 03 122632026 122634372 ECH