Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03948 ATGGAGAACATGATGGGTCTGCTGAGAATTCATGTCCAAAGAGGGGTTAATCTCGCTATCAGAGATGTAGTGAGCAGTGATCCTTATATCATCATCAAAATGGGCAAGCAGAAGCTGAAGACTCGGGTAGTGAAGAAGAATCTCAACCCTGAATGGAATGATGATTTGACTCTCTCCATTTCAGATCCCAATCTTCCAGTGCACCTATTTGTGCATGACAAGGACACATTCAGCCTTGATGACAAAATGGGGGATGCTGAGTTTGATATCAGTCCGTTTGTGGAAGCGGTGAAGATGCGGCCGCAAGGCGTCCCGAACGACACGATAGTCAAAAGGGTGCAGCCTAGCAGACAGAACTGTTTGGCAGAGGAGAGCCACATTGTGTGGAGAGATGGCAAAGTGGTTCAGAACATGGTTCTTAGGCTAAGAAATGTGGAGTCTGGTGAAGTGGAGCTACAACTCCATTGGATTGACATTCCTGTCTCTTCTATACGCTTTTACCCCCCATCCCATCACTACGCAAAACTTGTGCAGTTCGGGCCACACTCTCTTGGGGAAGTAAAAAGTGAAAACCTCTTGATGGAAATGAATATTGCAAGGTGTAGTCCCAAAACAGAGGGATCATTCTTTTCCAATACTTCAAGAACAGTAGGATGGGAGAACATGCAGAAACTTCCATATAATAATGTGGCTGTCCAGAGTCCAAGATGGACCTTGCGCAAATTCACCTCGCCCTATCGAGCTTTTACTGCAGTGTGCCCAAGAAGGTCTTTTTTCTGTAGAACGCGTTCTATGGCAACTAGTTTGGAGGAATCTTCATCTTTACAACCTGGAGAAAATTCCACTGAGGATGAGGATCCTTATGCTGAAGAAGAATTGGAAAATTTGGCACAACCACTTACCAGAGAACAGATAATGGCTCTGCTTGTTGATACTGAAAGAGAAAAACTTACGAAGAAGCTTAGTGAAGCCAACCAGCATAATCGGTTCCTCAAAAGGCAGTTGCATATAAAGGAAGATGCATTGGTAAATTTTAAAAGTGAGCTTGCTGTCATGGAACTTGAAGTTCAGGCTTTGGTCCAACTAGCAAAAGAAATAGCAAAATCTGGTATTCCAGAAGGTTCAAGGAAGATCAACGGAAAGTACATTCATTCTCACCTGGTTACTCGATTAGAAGCTGTACATGAACAATTGATGGAACAAATAAAGGACGTTGGTGCGGCACAGTCCAAGGAGGTTTCTATTTTTTGGGTTGGAATGGCTGAGAGCGTGCAAGTTATGGGGACCTTTGATGGTTGGAGCCAAGGAGAGCACCTTTCACCTGAGTATACTGGTTCTTACACTAGGTTCTCAACAACGTTGATGCTGAGACCCGGGAGGTATGAAATCAAATTCTTAGTAGACGGTGAATGGAAGCTATCACCTGAGTTCCCCATTATTGGTGAAGGATTAACCAAAAACAATTTGTTAGTTGTCGAGTGA 1482 0.4379 MENMMGLLRIHVQRGVNLAIRDVVSSDPYIIIKMGKQKLKTRVVKKNLNPEWNDDLTLSISDPNLPVHLFVHDKDTFSLDDKMGDAEFDISPFVEAVKMRPQGVPNDTIVKRVQPSRQNCLAEESHIVWRDGKVVQNMVLRLRNVESGEVELQLHWIDIPVSSIRFYPPSHHYAKLVQFGPHSLGEVKSENLLMEMNIARCSPKTEGSFFSNTSRTVGWENMQKLPYNNVAVQSPRWTLRKFTSPYRAFTAVCPRRSFFCRTRSMATSLEESSSLQPGENSTEDEDPYAEEELENLAQPLTREQIMALLVDTEREKLTKKLSEANQHNRFLKRQLHIKEDALVNFKSELAVMELEVQALVQLAKEIAKSGIPEGSRKINGKYIHSHLVTRLEAVHEQLMEQIKDVGAAQSKEVSIFWVGMAESVQVMGTFDGWSQGEHLSPEYTGSYTRFSTTLMLRPGRYEIKFLVDGEWKLSPEFPIIGEGLTKNNLLVVE 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03948 493 MobiDBLite consensus disorder prediction 269 295 - -
Aip03g03948 493 Gene3D C2 domain 3 163 IPR035892 -
Aip03g03948 493 SMART C2_3c 7 102 IPR000008 -
Aip03g03948 493 Pfam C2 domain 6 92 IPR000008 -
Aip03g03948 493 CDD E_set_AMPKbeta_like_N 412 492 - -
Aip03g03948 493 CDD C2_ArfGAP 6 148 - -
Aip03g03948 493 Coils Coil 314 334 - -
Aip03g03948 493 Gene3D Immunoglobulins 404 492 IPR013783 -
Aip03g03948 493 Pfam Glycogen recognition site of AMP-activated protein kinase 413 489 IPR032640 -
Aip03g03948 493 ProSiteProfiles C2 domain profile. 1 104 IPR000008 -
Aip03g03948 493 PANTHER PROTEIN PTST, CHLOROPLASTIC 196 493 - -
Aip03g03948 493 SUPERFAMILY E set domains 412 492 IPR014756 -
Aip03g03948 493 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 91 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03948 Aip-Chr3 122520387 122528860 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03948 38 160 C2H2 Transcription Factor Family AT1G70790 60.000 1.13e-45 154
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03948 03 122520387 122528860 Aip03g03948 03 122520387 122528860 ECH
Aip03g03948 03 122520387 122528860 Aip05g02945 05 131288965 131291483 ECH