Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g03804 ATGTTGGTTAATATCATGGCTCCATCAACGACTAACGAATGGACACAGACTCAAATGATAGATGATCAAGATCACAAGACCAAAGCTGAAGCTCCATCATCATCATCTGCTAGGGTTATGGAAAAACAAGGTCAAGAACATGTTCAGCAGCAGCAGCAGCAGCAGCAACAAGCTCTCAAGTGCCCTCGCTGCGATTCATCCAACACCAAATTCTGCTACTACAACAACTACAGCTTATCGCAGCCCAGACACTTCTGCAAAGCCTGCAAGCGATACTGGACAAGAGGTGGAACCCTCCGCAACGTCCCCGTCGGCGGTGGCTGCAGAAAGAACACCAAGCGTCTCAAGCGCCAATCATCTTCTTCCATCGATGCCACTCCTTCTCCTTCTTCTTCTTCCACTCATCCTCCAACTTCTAATATCAACCCTTTGTTTTATGGGGTACCAAGTAGTAGTAATAATAATAGCAACTGTGATTTGTTGAACCTACCTTCTTTCCCTGGGTTCAGAGTGAGTTCTGGGTATGATAATGATGTTCAGCCTCACCTAAGTGGGTTAGGTTTTTCATCAGGGATCATGTCCAATATTGAAGCTACTGGATTTGGTTCAAATGAGAGTAACTCCTTTCTTTCGGCTTACAATTCCATCTTCGGTTCGTGTTCTTCATCAGCTTCTACTACCTTGCTGAGTTCCACTCTACTGCAGCATAAATTCATGAATGGTGGTGGATTCCAAGGGCTAGCTACTCCTGAGGTTGAGGGAGAAAGAGGAGGAGTCATGGGTTGTTCTTCTTTGAAAGAAGTGAAAGGTGAATTATTGGGAGAAGAGAGAGGGAGAGAGAGGTTGGAGTGGCAGAATCAGATGATGGAACATACGATGGGCTATTCTGATCCCTCTTCTTCGCTTTATTGGAGCACATCATCATCACCCATGGCTGCTTCTTCTTGGAATGATCAACCCAATATTGGTCCTTCTGTCACTTCACTCATCTAG 993 0.4532 MLVNIMAPSTTNEWTQTQMIDDQDHKTKAEAPSSSSARVMEKQGQEHVQQQQQQQQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNTKRLKRQSSSSIDATPSPSSSSTHPPTSNINPLFYGVPSSSNNNSNCDLLNLPSFPGFRVSSGYDNDVQPHLSGLGFSSGIMSNIEATGFGSNESNSFLSAYNSIFGSCSSSASTTLLSSTLLQHKFMNGGGFQGLATPEVEGERGGVMGCSSLKEVKGELLGEERGRERLEWQNQMMEHTMGYSDPSSSLYWSTSSSPMAASSWNDQPNIGPSVTSLI 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g03804 330 MobiDBLite consensus disorder prediction 118 146 - -
Aip03g03804 330 ProSitePatterns Zinc finger Dof-type signature. 61 97 IPR003851 GO:0003677|GO:0006355
Aip03g03804 330 MobiDBLite consensus disorder prediction 32 54 - -
Aip03g03804 330 Pfam Dof domain, zinc finger 57 113 IPR003851 GO:0003677|GO:0006355
Aip03g03804 330 MobiDBLite consensus disorder prediction 103 146 - -
Aip03g03804 330 ProSiteProfiles Zinc finger Dof-type profile. 59 113 IPR003851 GO:0003677|GO:0006355
Aip03g03804 330 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 7 312 IPR045174 GO:0003700|GO:0006355
Aip03g03804 330 MobiDBLite consensus disorder prediction 24 54 - -
Aip03g03804 330 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-LIKE 7 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g03804 Aip-Chr3 120390680 120391833 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g03804 54 201 C2C2-Dof Transcription Factor Family AT5G65590 48.485 1.18e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aip03g03804 zf-Dof 7.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g03804 - - aip:107631218 555.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03804 03 120390680 120391833 Aip03g03804 03 120390680 120391833 ECH
Aip03g03804 03 120390680 120391833 Aip10g00431 10 4279048 4279581 PCT