Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01241 ATGTCTTTATTACTAAGGCTATTTATCTCACTTTACATTACCCTTGCTTCATTAGGCTTATGTTTTAGCTATTATATAGAGGAACCATTTCATCACACAAATGTTGAACCATACATTGTTCATCATGATGGGAGATTTATCAAGAGAAAACATGAACACTTTGGCCTAATGATGAGAGCTAATAGAGCTAAAAACCTTCATTTTTCAAGGTCAAGTGGAACAATTAGTGTTAATGACTTTGGAGCCAGAGCTGATGGAAGTGACGACAGTCGGGCATTTGAAAAGGCTTGGAATGAAGCATGTTCTAGTGGGGTCACCCTTGTGGTGCCTGAAAGAAGGACCTACACTCTTAAGCCAATAAGATTTTCAGGTCCATGCAGACCCAACACTGCATTCATGATATATGGAACAATTAAGGCATGGCCAGAGATGTCAGCATATGAAGATGATAGAAAACATTGGATTGTGTTTGATAGTGTCAACAACTTCAGAGTTGATGGTGGTGGCACTTTCAATGGCAATGGCAAAAAATGGTGGCAGAATTCATGCAAAACTAATGATAACCTTGCTGTGACATTTTACCAATGCAAGAATTTGAGAGTGGCAAATGTGAGATTGAAAGATGCACAACAAATGCATGTGGCATTTGAGAGTTGCTTCAATGTTATAGTTTCCAATGTTCTTGTTAGAGCACCAGGATATAGTCCCAACACTGATGGAATTCATGTTGCTGAAACACAAAACATTGTTATAAGCGACAGTGACATTGGAACAGGTGATGATTGTATTTCAATAGTAAGAGCTGATAACTCTGAAGCTGTAGTGTCCAATGTGGTTGTGAACAGAGCCACCTTAACAGGAACAAGTAATGGAGTTAGAATCAAGACATGGCAGGGAGGTTCTGGTTATGCAAGGAACATAAAGTTTTTGAACATAGTGATGCAAAATGTGACAAATCCCATAATCATAGATCAAAACTACTGTGATCAAGAAAAGCCATGCCATGAGCAGAAGTCAGGAGTTCAACTAAGCAATGTGCTTTACCAAAACATCAGAGGAACAAGTGCTTCAGAAGTGGCTATAAAATTTGATTGCAGCAGAACAGTGCCATGCAGAGAAATCTACCTTGAGGATGTGATATTAGAAGCAGAAGATGGTGGCAATGGCGACACGGTTGCCACGTGTCAGAATGTAAGATATGTGAACCGAGGAAAGTTTTTCCCTCAATGCACTCCAATGAGAAATAATCAAAGGGGAGGAAGATTTTAA 1269 0.3924 MSLLLRLFISLYITLASLGLCFSYYIEEPFHHTNVEPYIVHHDGRFIKRKHEHFGLMMRANRAKNLHFSRSSGTISVNDFGARADGSDDSRAFEKAWNEACSSGVTLVVPERRTYTLKPIRFSGPCRPNTAFMIYGTIKAWPEMSAYEDDRKHWIVFDSVNNFRVDGGGTFNGNGKKWWQNSCKTNDNLAVTFYQCKNLRVANVRLKDAQQMHVAFESCFNVIVSNVLVRAPGYSPNTDGIHVAETQNIVISDSDIGTGDDCISIVRADNSEAVVSNVVVNRATLTGTSNGVRIKTWQGGSGYARNIKFLNIVMQNVTNPIIIDQNYCDQEKPCHEQKSGVQLSNVLYQNIRGTSASEVAIKFDCSRTVPCREIYLEDVILEAEDGGNGDTVATCQNVRYVNRGKFFPQCTPMRNNQRGGRF 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01241 422 PANTHER POLYGALACTURONASE 268 411 - -
Aip03g01241 422 PANTHER POLYGALACTURONASE 7 266 - -
Aip03g01241 422 SUPERFAMILY Pectin lyase-like 71 412 IPR011050 -
Aip03g01241 422 Pfam Glycosyl hydrolases family 28 270 399 IPR000743 GO:0004650|GO:0005975
Aip03g01241 422 Pfam Glycosyl hydrolases family 28 105 267 IPR000743 GO:0004650|GO:0005975
Aip03g01241 422 PANTHER - 268 411 - -
Aip03g01241 422 PANTHER - 7 266 - -
Aip03g01241 422 SMART pbh1 304 325 IPR006626 -
Aip03g01241 422 SMART pbh1 219 245 IPR006626 -
Aip03g01241 422 SMART pbh1 246 267 IPR006626 -
Aip03g01241 422 SMART pbh1 275 296 IPR006626 -
Aip03g01241 422 Gene3D - 58 416 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01241 Aip-Chr3 12294010 12297400 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01241 03 12294010 12297400 Aip08g02481 08 106369143 106374633 PCT