Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00785 ATGGAAGGGCAAGAAGCATTGAAGGGTAATAGTAGTTTTTCTTCAAAGTGTTCAGACTGTGGGAACCAAGCAAAGAAAGATTGCTCATACACAAGGTGCAGAACTTGCTGCAAGAACAAAGGATTCCACTGCCCAACCCATGTTAGAAGCACTTGGATCCCTGTCGATAGAAGACGCCATAAATCATCCTCATCATCATCACTACTACTCATGGATCATCATCACTCTTCTCTCACTACAAATCTACACTTCCTTCATCATCAACATATCCCTAAAAGGCACAAGCACACCCCATATTCATCATCATCAGAGGAGTTTCCAGCAAGTATGAGTTCGGTGGCAATATTCAGATGCGTTAGGGTGCGTTCCATGGATGAAAGTGTTAATGAAATTGCGTACCAAACATCTGTCAACATTGGAGGACATGTTTTCAGTGGTCTTCTTTATGATCAAGGCCCTCATCAACCACCACCATCAAACTCCATAGACCCTCATCATCATCATCATCATCATGCTGATCACCTACACAGTAATACTAATAATCTCAACCTTATGATGATGAGTAATAGTAGTAATAATGTTCCAACCATTATTGATGCTCCTCCTCTTCCTCATGATCAGCCTTTTCTATCATCTTCTTCTACTTCTTTTGTTAGGCCTCCTGCTATGCCATATTATTTTTCACACCCTCCTAAACCTTGA 702 0.4103 MEGQEALKGNSSFSSKCSDCGNQAKKDCSYTRCRTCCKNKGFHCPTHVRSTWIPVDRRRHKSSSSSSLLLMDHHHSSLTTNLHFLHHQHIPKRHKHTPYSSSSEEFPASMSSVAIFRCVRVRSMDESVNEIAYQTSVNIGGHVFSGLLYDQGPHQPPPSNSIDPHHHHHHHADHLHSNTNNLNLMMMSNSSNNVPTIIDAPPLPHDQPFLSSSSTSFVRPPAMPYYFSHPPKP 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00785 233 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 10 193 IPR007818 GO:0003700|GO:0006355
Aip03g00785 233 MobiDBLite consensus disorder prediction 1 25 - -
Aip03g00785 233 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 16 58 IPR006510 -
Aip03g00785 233 MobiDBLite consensus disorder prediction 150 176 - -
Aip03g00785 233 PANTHER BNAC01G23660D PROTEIN 10 193 - -
Aip03g00785 233 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 106 153 IPR006511 -
Aip03g00785 233 Pfam Domain of unknown function (DUF702) 15 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00785 Aip-Chr3 7606763 7608014 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Aip03g00785 DUF702 5.2e-51 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00785 03 7606763 7608014 Aip03g00785 03 7606763 7608014 ECH
Aip07g02487 07 104200694 104203217 Aip03g00785 03 7606763 7608014 ECH
Aip06g00089 06 845534 846720 Aip03g00785 03 7606763 7608014 ECH
Aip03g00785 03 7606763 7608014 Aip07g02487 07 104200694 104203217 ECH