Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00396 ATGGATCCTTCTAGTGGACAACAGAACCAGCAGCAAATGGGAAATAATAATAACAATCAGTCACTAGAAAGCATGATGTTGGGTTGCACAAAACAAGAACAACAACAACAAGAGAAGAAGCCAAGGCCACAACCAGAACAAGCATTGAAATGTCCAAGATGTGATTCAACAAACACAAAGTTCTGTTACTACAACAACTACAGTCTCTCACAGCCAAGGTACTTCTGCAAATCTTGCAGAAGGTACTGGACAAAAGGAGGAACATTGAGGAATGTTCCAGTAGGTGGAGGCTGCAGAAAGAACAAAAGATCATGTTCTTCTTCATCAAAGAGAGCTCAAGATCAATTACCCTTTAACCCAGATCATAACCCTCTCATGAATTCTCTCCCTCCATTGTCATATGACTCTGAATTCACACTTGCATTGGCTAGGCTCCAAAAACAAACAGGTGGTGTGCATCTTGGTCTTGATGACCACCATGATCTCTCAATGTTGGTGAACCACACTAACACTAACACCAACACCACAACACAACAACAACAACAAGGATTCTTGGATGCACTTAGGAGCAATGGATTCAACAGCAACACCATGCATAGTGATTTGTACTATGGTGGAAATGGGGACATGGGTGAGGTTTATAATGAGATTATGCTTCCTTATGAGCAAGAAATGAGTGTTGAAACAACTCAAGCAGTTACTGTCACAACCACAAAGCAAGAACTCTGCAATGTTAGTTATAATTGCAATAGTAATAACAATAATAATAATAAGGTTTTGTGGGGTTTTCCATGGCAGATCAATGGAGATACAAACATGCTTGGAGATATTGATTTATCAAGAGCAAGTTGGAATGGTAATGGTCCTCTCACTACTCCATTATCTTGGCATGGACTTCTCAATACTCCCCTAATGTAG 918 0.4009 MDPSSGQQNQQQMGNNNNNQSLESMMLGCTKQEQQQQEKKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSCSSSSKRAQDQLPFNPDHNPLMNSLPPLSYDSEFTLALARLQKQTGGVHLGLDDHHDLSMLVNHTNTNTNTTTQQQQQGFLDALRSNGFNSNTMHSDLYYGGNGDMGEVYNEIMLPYEQEMSVETTQAVTVTTTKQELCNVSYNCNSNNNNNNKVLWGFPWQINGDTNMLGDIDLSRASWNGNGPLTTPLSWHGLLNTPLM 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00396 305 Pfam Dof domain, zinc finger 47 103 IPR003851 GO:0003677|GO:0006355
Aip03g00396 305 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 304 IPR045174 GO:0003700|GO:0006355
Aip03g00396 305 PANTHER DOF ZINC FINGER PROTEIN DOF3.2-LIKE 16 304 - -
Aip03g00396 305 MobiDBLite consensus disorder prediction 98 121 - -
Aip03g00396 305 MobiDBLite consensus disorder prediction 1 50 - -
Aip03g00396 305 MobiDBLite consensus disorder prediction 1 34 - -
Aip03g00396 305 ProSitePatterns Zinc finger Dof-type signature. 51 87 IPR003851 GO:0003677|GO:0006355
Aip03g00396 305 ProSiteProfiles Zinc finger Dof-type profile. 49 103 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00396 Aip-Chr3 3798987 3800464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00396 47 305 C2C2-Dof Transcription Factor Family AT2G28510 42.599 5.29e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aip03g00396 zf-Dof 6.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00396 - - gmx:778106 304.293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00396 03 3798987 3800464 Aip03g00396 03 3798987 3800464 ECH
Aip08g00483 08 3813022 3814436 Aip03g00396 03 3798987 3800464 PCT