Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00010 ATGATGATGGTGGATAACAAGGACCCTGCAATTACTCTCTTTGGGAAGAAGATTCCCTTTCCCGGTGAAGCTGCTCTCAATGCCGCGGAATTAGAGGATGATGAGGTGGACAAACAAGTAGGACACAAGGATGATGGAGCTGATGAAGTTACTGAGAAAAAGAAAGAGGCTGATCCTTCTCGAAATGGAAATGCAGAGATCAATAAAAGAAAGGATTGGGGTGTTCAGAACCCAAAAACACCATCCATAGAGGAAGAAAGTGCAAAAATAAAGAAGGAGCAAAGCGATGCAGAGCAAGAGAAGGCAGTGAAGAAGCCGGATAAAGTGCTTCCATGTCCGCGCTGCAATAGCATGGACACCAAGTTCTGCTACTACAACAACTACAACGTCAACCAGCCGCGCTACTTCTGCAAGGCGTGCCAAAGATACTGGACTGCAGGCGGCACCATGAGGAACGTGCCGGTTGGGGCAGGCAGGAGAAAGAACAAGAACAGCGCCAGCGCCTCCCACTATCGCCACATCAACATCTCTGATGGGACCTTGAAATCCAGTGGCAGAGTCCTCAGCTTTGGATTGGATACACCACCACCACCCATATGTGATTCCATGGCGTCTGTCCTCAACGGTTTTCATGGAATTGAGGATCAAAGTGGAGAAAATGGCGATGACTGCTCGAGTGCATCTTCCATTACCATGGAGGAAACAGGAAAAACCGCATCCCAAGAGCCTTTAGCACAAAGCCCTCCCCAAGTCCCATGCATTCCTAGTGTTCCTTGGCCTTATCCCTGGAATTCTGCTCTGTGTCCTCCTGGATTTCCCATTTCATTCTACCCGGCGCCTCTTTGGAATTGGAATGTTCCGTGGTTCCCCTCACATCCATCTACTCCAAACTCTCCAACTCTAGGGAAGCACTCCAGGGATGATGGTGATGATGACACTGTCAAGCAAGACTATAGGCGAAAGGAAGAACCTCCAAGGCAGAGAAATGGGTGTGTTTTGGTTCCCAAAACTTTAAGAATTGATGATCCAAGTGAAGCTGCAAAGAGTTCTATATGGGCAACTCTAGGAATCAAGAATGAATGTGTCATTGGGGGTGGAATGTTTAAGGCTTTCCGATCAAACAAGGAAGAGAAGAATAAAGTGGTTGAAACCTCGCCAGTGTTGCTGGCTAACCCTGCAGCCTTGTCTAGATCCCTTCATTTTCATGAGAACTCCTGA 1218 0.4778 MMMVDNKDPAITLFGKKIPFPGEAALNAAELEDDEVDKQVGHKDDGADEVTEKKKEADPSRNGNAEINKRKDWGVQNPKTPSIEEESAKIKKEQSDAEQEKAVKKPDKVLPCPRCNSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSASASHYRHINISDGTLKSSGRVLSFGLDTPPPPICDSMASVLNGFHGIEDQSGENGDDCSSASSITMEETGKTASQEPLAQSPPQVPCIPSVPWPYPWNSALCPPGFPISFYPAPLWNWNVPWFPSHPSTPNSPTLGKHSRDDGDDDTVKQDYRRKEEPPRQRNGCVLVPKTLRIDDPSEAAKSSIWATLGIKNECVIGGGMFKAFRSNKEEKNKVVETSPVLLANPAALSRSLHFHENS 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00010 405 PANTHER CYCLIC DOF FACTOR 2 3 404 IPR045174 GO:0003700|GO:0006355
Aip03g00010 405 ProSiteProfiles Zinc finger Dof-type profile. 110 164 IPR003851 GO:0003677|GO:0006355
Aip03g00010 405 PANTHER CYCLIC DOF FACTOR 1 3 404 - -
Aip03g00010 405 MobiDBLite consensus disorder prediction 295 329 - -
Aip03g00010 405 MobiDBLite consensus disorder prediction 303 327 - -
Aip03g00010 405 Coils Coil 83 103 - -
Aip03g00010 405 ProSitePatterns Zinc finger Dof-type signature. 112 148 IPR003851 GO:0003677|GO:0006355
Aip03g00010 405 MobiDBLite consensus disorder prediction 211 249 - -
Aip03g00010 405 MobiDBLite consensus disorder prediction 219 247 - -
Aip03g00010 405 MobiDBLite consensus disorder prediction 31 104 - -
Aip03g00010 405 MobiDBLite consensus disorder prediction 31 68 - -
Aip03g00010 405 MobiDBLite consensus disorder prediction 84 104 - -
Aip03g00010 405 Pfam Dof domain, zinc finger 107 164 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00010 Aip-Chr3 116574 118862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00010 2 403 C2C2-Dof Transcription Factor Family AT3G47500 47.323 1.41e-115 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aip03g00010 zf-Dof 1.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00010 - - aip:107629495 842.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02113 01 114056179 114059452 Aip03g00010 03 116574 118862 ECH
Aip03g04289 03 127276319 127280486 Aip03g00010 03 116574 118862 ECH
Aip03g00010 03 116574 118862 Aip03g00010 03 116574 118862 ECH