Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02113 ATGGAGGACCAAAGTACTGTTACTATTAGGGACCCTGCAATTAAGCTTTTTGGTCAGAAGATTCCCCTTCCCGGAGATCCTGATGTTCTTCCCGCCGCGGCCATGGACCATGAACAGGACCTGCATGAAGAAGACGAAGAAGAGGAGGAGGACCAGGATTACGACGAGGAAGACGGAGAAACCCAAGACACTCACGAGGACAAGGATGCAGAAGCTGAAAATCTTACCACCCAAGAGCAAGAAGCTGATCCTCCTCCAAATGTAGAAGAGAACAAGAAATCAGCCACATCACCTGAGGCTATGGTGAATCCGAAAACACCTGCCATAGAAGAAGATTCTGCAAAATCAAAAAGTGACAAGTCAGATAAGGAACAAGGTGACACATCCAGTCCACAAGATCAGAAACCCCTGAAAAAGCCTGATAAGTTGCTTCCATGCCCCCGCTGCAATAGCATGGATACTAAATTCTGTTACTACAACAACTACAACGTAAACCAGCCACGTTATTTCTGCAAAGCCTGTCAACGATACTGGACTGCAGGTGGCACCATGAGGAATGTGCCGGTTGGAGCAGGGCGGCGAAAAAACAAGAACTCTGCCAACCATTATCGCCACATCACAATCTCTGAGGCTCTTCAAGCAGCTAGAATTGATGCTCCTAACGGGACTCATCTCCCTGCTTTGAAAAGCAATGGGAGAGTCCTCAGTTTCGGAATAGATGCCCCAATCTGCGATTCCATGGCATCTGTCCTTAACCTTGGAGAGAAAAAGGTTCTTAATGGCACAAGAAATGGATTCCATCATGGCTTTGATGATCAAAGATTGAAAGTTCCTTCCAAAAGTGGTGAAAATGGCGAAGCTTGCACGAGTTCATCGCCTGTTGCAGTTTCAAATCCAATGGGGGAAAACAGTAAAAGTACTTTCCAAGAACCAATGCTTCCAAGCAACGGTTACCTTCCTCAAGTTCCTTGTATTGCTAGTGTTCCTTGGCCTTATCCGTGGAATGCGGCAATTCCCTCACCAGCTATGTGTCCTCCAGGATTTCCTGCCCTTCCATTCTATCCTGCGGCTTTTTGGAACTGCAGCATGCCAGGGAACTGGAATGTTCCATGGTTTCCTCCACAGTCCTCCCCTTCAAACCCAAAATCTCCAAGTTCCGGACCGAATTCTCCAACTCTGGGGAAGCACTCTAGGGACGGTGACACGGGTAACCAAGATTCTTTGAGCAAAGAAGAGCCACCAAAGCAGAGAAATGGAAGCGTTTTGGTTCCCAAAACGTTGAGAATCGATGACCCAAGTGAAGCTGCAAAGAGTTCTATATGGGCAACTCTAGGGATCAAGAATGAATCCATTAGTGGGGGAGGCATGTTTAAGGCCTTCCAATCAACAAAAGAAGAAAAGAATCAAGTCGAAGCTTCTCCTGTGTTGCGGGCTAACCCTGCAGCTTTGTCAAGATCCCTTAATTTTCACGAGAGCTCGTGA 1482 0.4703 MEDQSTVTIRDPAIKLFGQKIPLPGDPDVLPAAAMDHEQDLHEEDEEEEEDQDYDEEDGETQDTHEDKDAEAENLTTQEQEADPPPNVEENKKSATSPEAMVNPKTPAIEEDSAKSKSDKSDKEQGDTSSPQDQKPLKKPDKLLPCPRCNSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSANHYRHITISEALQAARIDAPNGTHLPALKSNGRVLSFGIDAPICDSMASVLNLGEKKVLNGTRNGFHHGFDDQRLKVPSKSGENGEACTSSSPVAVSNPMGENSKSTFQEPMLPSNGYLPQVPCIASVPWPYPWNAAIPSPAMCPPGFPALPFYPAAFWNCSMPGNWNVPWFPPQSSPSNPKSPSSGPNSPTLGKHSRDGDTGNQDSLSKEEPPKQRNGSVLVPKTLRIDDPSEAAKSSIWATLGIKNESISGGGMFKAFQSTKEEKNQVEASPVLRANPAALSRSLNFHESS 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02113 493 MobiDBLite consensus disorder prediction 77 101 - -
Aip01g02113 493 Pfam Dof domain, zinc finger 142 198 IPR003851 GO:0003677|GO:0006355
Aip01g02113 493 MobiDBLite consensus disorder prediction 270 299 - -
Aip01g02113 493 MobiDBLite consensus disorder prediction 399 413 - -
Aip01g02113 493 PANTHER CYCLIC DOF FACTOR 2 9 492 IPR045174 GO:0003700|GO:0006355
Aip01g02113 493 MobiDBLite consensus disorder prediction 110 142 - -
Aip01g02113 493 MobiDBLite consensus disorder prediction 40 64 - -
Aip01g02113 493 PANTHER CYCLIC DOF FACTOR 1 9 492 - -
Aip01g02113 493 ProSitePatterns Zinc finger Dof-type signature. 146 182 IPR003851 GO:0003677|GO:0006355
Aip01g02113 493 MobiDBLite consensus disorder prediction 283 299 - -
Aip01g02113 493 MobiDBLite consensus disorder prediction 374 429 - -
Aip01g02113 493 ProSiteProfiles Zinc finger Dof-type profile. 144 198 IPR003851 GO:0003677|GO:0006355
Aip01g02113 493 MobiDBLite consensus disorder prediction 1 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02113 Aip-Chr1 114056179 114059452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02113 10 491 C2C2-Dof Transcription Factor Family AT3G47500 47.094 3.90e-124 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aip01g02113 zf-Dof 2.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02113 - - gmx:778113 687.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02113 01 114056179 114059452 Aip03g00010 03 116574 118862 ECH
Aip03g04289 03 127276319 127280486 Aip01g02113 01 114056179 114059452 ECH
Aip01g02113 01 114056179 114059452 Aip01g02113 01 114056179 114059452 ECH