Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01828 ATGGGTTTCTCCTCTCTCCACGTCTGCATGGATTCATCAGCATCCGATAATAATTGGCTTCAGGGCACAATTAACGAGGAGGGTAGTACAGGGGTGGATGATTCTTCTTGTCCTTCCCCAACAGGGGACATGATGATGATTGCATGCTCGAACAAGCTTCCAACAATGATCATAGAAGGAAGTAGTAGTAGAAGACTAATGACAAGGCCCCCACAAGACCAACTAGCTCTAAAGTGTCCAAGGTGTGAGTCAACACACACAAAGTTCTGTTACTACAACAACTACAGCCTCTCACAGCCAAGGTACTTCTGCAAATCTTGTAGAAGGTATTGGACCAAAGGTGGCACTCTTAGGAACATCCCTGTTGGAGGTGGTTGTAGAAAGAACAACACCAACAAGAAATCCTCTTCTAATTCCTCCAAGAAATCATCCAATAATAACGACAACAATGATCAACCATCACCACTTCCTATTAGTGTTAATATTAATAATCAAAACCAACTACATTATCCTTCTAATAATGGTGGTTTCCCAGATCTACATCAATTCTCCTCTAACATGAACAGTTTGTTTGGGATGAGTAGTATTGGTGGGGGGTTATTGGGAAACCCTAATTTCATGTTTGAGAATAACCCTAGGCCGTTGGACTTCATGATGGAGAGTGGTATCATTAAGAGTGGTTCTAGGAGCTTTGATTTCCTTGGAAATAGTGATCATCATCATCATATGATGATGAATGGTGGCGGTTACAATTTGATGACGTCATCATCATCACCAAATTATCAAGGACTTTGCTCTTCAGCATTTGGAGGAAATAATAATAATATGTCACTTGATGGAGGGAACAATCACAACAACAACAACAGCAACAATACTGGGAGCTACAACATTATGGGATCTTGTCAGAGATTGATGTTACCATATGATGATTCAGGTGACAATGGCAATCAAAATAGTTTGATTGATGTGAAGCCAAACCCTAGGCAATTGTTTCCCCTTGATGGAAAAGAGACATTTGGGTCATGGACTACTACCGGAATGATTAACAGCTATGGATCTTCCGCAACGAACCCTTTGGTCTAG 1083 0.41 MGFSSLHVCMDSSASDNNWLQGTINEEGSTGVDDSSCPSPTGDMMMIACSNKLPTMIIEGSSSRRLMTRPPQDQLALKCPRCESTHTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNIPVGGGCRKNNTNKKSSSNSSKKSSNNNDNNDQPSPLPISVNINNQNQLHYPSNNGGFPDLHQFSSNMNSLFGMSSIGGGLLGNPNFMFENNPRPLDFMMESGIIKSGSRSFDFLGNSDHHHHMMMNGGGYNLMTSSSSPNYQGLCSSAFGGNNNNMSLDGGNNHNNNNSNNTGSYNIMGSCQRLMLPYDDSGDNGNQNSLIDVKPNPRQLFPLDGKETFGSWTTTGMINSYGSSATNPLV 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01828 360 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 32 326 IPR045174 GO:0003700|GO:0006355
Aip01g01828 360 MobiDBLite consensus disorder prediction 125 175 - -
Aip01g01828 360 MobiDBLite consensus disorder prediction 121 175 - -
Aip01g01828 360 Pfam Dof domain, zinc finger 76 131 IPR003851 GO:0003677|GO:0006355
Aip01g01828 360 ProSitePatterns Zinc finger Dof-type signature. 79 115 IPR003851 GO:0003677|GO:0006355
Aip01g01828 360 PANTHER DOF ZINC FINGER PROTEIN DOF5.6-LIKE 32 326 - -
Aip01g01828 360 ProSiteProfiles Zinc finger Dof-type profile. 77 131 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01828 Aip-Chr1 90861027 90863395 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01828 1 218 C2C2-Dof Transcription Factor Family AT5G62940 46.053 3.58e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aip01g01828 zf-Dof 2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01828 - - aip:107631971 663.299