Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01017 ATGGCCATGTCTAGAAGAGAAATGGATCGAATCAAAGGCCCGTGGAGCCCGGAAGAAGATGAGGCCCTGCAGAGGCTGGTGGAGAGGCACGGACCCAGGAACTGGACGTTGATAAGCAAGTACATCCCGGGCCGCTCCGGGAAGTCCTGCAGGCTAAGATGGTGTAACCAACTTTCACCTCAGGTTGAGCACCGGGGCTTCACGCCCGATGAGGATGAGACGATAATCCGGGCCCATGCCCGGTTCGGTAACAAGTGGGCTACAATAGCCCGACTCCTGTCTGGTCGAACCGACAACGCGGTAAAGAATCACTGGAACTCAACACTCAAGCGCAAGTGCTCATCCATGATGATCGACGAGCCTGCAACAGGTCCGGCGGACTTTGACGGCGGTTACTACCTACGGCCCGCGAAGAGGTCTGCGAGCGCAGGTGCTACGATGCCGCTATCCACCGGACTTCACATGAGCCCGACGTCGCCGGGAAGCCCGTCGGGATCCGACGCGAGTGATTGCAGCGTTCGCGCTGTCTCTCCGTCTAACGTTCTGAGGCCCGTGCCCAGGACCGTTGTTCCTCCGATCGAAACTGCGTCCTCTTCAGAGGACCCTCCGACGTCGTTGTCGCTGTCTCTGCCTGGCGTAGACGTTGCTGTGGAAGTCTCCAATCGTGTCACGGAATCTATGTCACGTGCCTTTTCTCCGGCGATGGTGATGGCTTCGGCGGCGCCTTCAACGGCTGTAACGGCAGCGGATCCGCTGCCATTGCCATCGCCACAACATCAAGTGGTAGCGCCGTTTAATTTTAGCGCGGAGCTGATGGCGGTGATGCAAGAAATGATAAGAAAAGAAGTGAGGAGTTACATGGAACAGCGCAATGGGATGTGTTTTCAGGCTGCTGGTGGGTTTAGGAACGTTTCGGTAAATCGAGTTGGGATTAGCAAAGTCAACTCGTGA 951 0.5678 MAMSRREMDRIKGPWSPEEDEALQRLVERHGPRNWTLISKYIPGRSGKSCRLRWCNQLSPQVEHRGFTPDEDETIIRAHARFGNKWATIARLLSGRTDNAVKNHWNSTLKRKCSSMMIDEPATGPADFDGGYYLRPAKRSASAGATMPLSTGLHMSPTSPGSPSGSDASDCSVRAVSPSNVLRPVPRTVVPPIETASSSEDPPTSLSLSLPGVDVAVEVSNRVTESMSRAFSPAMVMASAAPSTAVTAADPLPLPSPQHQVVAPFNFSAELMAVMQEMIRKEVRSYMEQRNGMCFQAAGGFRNVSVNRVGISKVNS 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01017 316 SMART sant 63 111 IPR001005 -
Aip01g01017 316 SMART sant 11 60 IPR001005 -
Aip01g01017 316 CDD SANT 67 109 IPR001005 -
Aip01g01017 316 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Aip01g01017 316 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Aip01g01017 316 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 2 234 - -
Aip01g01017 316 PANTHER MYB PROTEIN-RELATED 2 234 - -
Aip01g01017 316 CDD SANT 14 56 IPR001005 -
Aip01g01017 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
Aip01g01017 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 113 IPR017930 -
Aip01g01017 316 Pfam Myb-like DNA-binding domain 12 58 IPR001005 -
Aip01g01017 316 Pfam Myb-like DNA-binding domain 67 108 IPR001005 -
Aip01g01017 316 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Aip01g01017 316 MobiDBLite consensus disorder prediction 147 174 - -
Aip01g01017 316 Gene3D - 65 124 - -
Aip01g01017 316 Gene3D - 11 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01017 Aip-Chr1 20991417 20992367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01017 4 314 MYB Transcription Factor Family AT4G37260 51.057 1.83e-97 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip01g01017 Myb_DNA-binding 1.1e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00604 05 7403598 7405576 Aip01g01017 01 20991417 20992367 ECH
Aip06g03738 06 134982571 134991782 Aip01g01017 01 20991417 20992367 ECH
Aip01g01017 01 20991417 20992367 Aip01g01017 01 20991417 20992367 ECH
Aip01g01017 01 20991417 20992367 Aip05g00604 05 7403598 7405576 PCT