Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01008 ATGTCTCCCACAACTCCCTCCCTTCTCGACACCCTCCTCTGCCAAGAAGAACACGACGACACCTTTGACGACACCCGAAACGACGCGTCGTTCCACCTCAACGACAACCACCACGACGAATCACCGTCGTTTTGCCCCGCAAAGCTCCAATCTTTTCCTCATCCCGTTCTGCATGACAACGACCTGTTCTGGGAACACGACGAGCTCGCCTCCTTAATCTCCAAAGAGGGAGAGACCCACGCCGCCGCTGGTAACGACGACGACCACCGTGATGGACTTCTAGATGGGCTTCGAGTTGGGCCCGTTGGCTGGATCACTAACGTGTGTGCGCACTATGGGTTTTCAGCTTTGACCACCGTTCTCGCCGTTAACTACTTCGACAGGTTCGTCACGAGCCTCACGTTTCAAAGGGATAAGCCATGGATGACTCAGTTAACGGCGGTTGCGTGCTTGTCAATTGCTGCAAAGATGGAAGAGACACATGTGCCCCTCCTCTTAGACCTCCAAGTGGAAGAATCGAGGTTTCTGTTTGAAGCAAAGACAATACAAAGAATGGAGCTTCTTGTGTTGTCTACTCTCAAATGGAAGATGCATCCGGTGACCCCAATTTCTTTCTTTGAACACATTGTTAGAAGGCTTGGCCTCAAGAGTCGCTTGCATTGGGAATTTCTATGGCGGTGCCAGCGGGTTCTTCTTGGCGTCATTGCCGATTCAAGGGTTATGAGTTATCTTCCATCTACATTGGCTGCTGCTACGATGATCCATGTTATTAAAGAGATTGAGCCATTTAATGCAACTAAGTACATTAGTGAACTTCTGGGACTACTCAAGATTAGTGAGGAACAAGGGAACCAGTGCTACAAACTCTTGCTGAAATCATTAGTTTGCGAAGAAGGTATTACTGACTGTCTTCACCAGATGCACAAGCGCAAGCGCAACCGCGAATCTGCCCCGAGTAGCCCGGGAGGTGTCATTGATGCTTCTTTCAGTTGTGAAAGCTCAAACGATTTGTGGGCCGTTGCGGCATCGTCGGTTTCACATTCGATGGAGCCGCTGTTTAAGAGGAGCAGAGCTAAGGACCAGCAGATGAGACTGCCTTCTGTTAGTCGCGTGTCTATCGATGTTCTTAATAGCCCTCATTAA 1143 0.4969 MSPTTPSLLDTLLCQEEHDDTFDDTRNDASFHLNDNHHDESPSFCPAKLQSFPHPVLHDNDLFWEHDELASLISKEGETHAAAGNDDDHRDGLLDGLRVGPVGWITNVCAHYGFSALTTVLAVNYFDRFVTSLTFQRDKPWMTQLTAVACLSIAAKMEETHVPLLLDLQVEESRFLFEAKTIQRMELLVLSTLKWKMHPVTPISFFEHIVRRLGLKSRLHWEFLWRCQRVLLGVIADSRVMSYLPSTLAAATMIHVIKEIEPFNATKYISELLGLLKISEEQGNQCYKLLLKSLVCEEGITDCLHQMHKRKRNRESAPSSPGGVIDASFSCESSNDLWAVAASSVSHSMEPLFKRSRAKDQQMRLPSVSRVSIDVLNSPH 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01008 380 SMART Cyclin_C_2 200 322 IPR004367 -
Aip01g01008 380 SMART cyclin_7 103 191 IPR013763 -
Aip01g01008 380 SUPERFAMILY Cyclin-like 66 198 IPR036915 -
Aip01g01008 380 Pfam Cyclin, N-terminal domain 96 197 IPR006671 -
Aip01g01008 380 PANTHER CYCLINS 39 364 IPR039361 -
Aip01g01008 380 Gene3D - 199 288 - -
Aip01g01008 380 PANTHER CYCLIN-D3-2 39 364 - -
Aip01g01008 380 Pfam Cyclin, C-terminal domain 200 298 IPR004367 -
Aip01g01008 380 CDD CYCLIN 97 190 IPR013763 -
Aip01g01008 380 Gene3D - 96 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01008 Aip-Chr1 20627570 20629074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01008 61 370 Core Cell Cycle Gene Families AT5G67260 51.111 5.95e-102 305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00605 05 7432013 7437504 Aip01g01008 01 20627570 20629074 ECH
Aip07g03542 07 125459191 125469325 Aip01g01008 01 20627570 20629074 ECH
Aip06g03745 06 135099957 135103313 Aip01g01008 01 20627570 20629074 ECH
Aip01g01008 01 20627570 20629074 Aip01g01008 01 20627570 20629074 ECH
Aip01g01008 01 20627570 20629074 Aip05g00605 05 7432013 7437504 PCT